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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGAGACCCTTACAGAAACATGGTGGCAGACTTGGACATGATGAAAAGTATTGTGGTTCATGTTTTGGTGCAGAAGAGgtaccttcgaccatttactacacttaaatttgctctagttttcttatgattttgtaactaccataacatgtgttaggtgtcaatgtggactgacaaaact...

Basic information

species Glycine max
transcript GLYMA08G07840.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07840.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0178g00020.t01 (Vitis vinifera), 5'ss of exon 5
ATTGAGAGACCCTTACAGAAACATGGTGGCAGACTTGGACATGATGAAAAGTATTGTGGTTCATGTTTTGGTGCAGAAGAGgtaccttcgaccatttactacact-taaatttgctctagt--tttcttatgattttgtaactac-cataacatgtgttaggtgtcaatgtggactgacaaaact
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ATTGAAAAGCCGTTACAAAGACATGGTGGCAGGCTTGAACACAATGAAAAATATTGTGGTTCATGCTATGGAGCAGAAGTGgtacatttgtttgtctggcactccctaggatttcttagatgatgtgttactaatttttatgtatgtgtcagtaatatttaccatatatgtggactctcaa----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326043|gb|FK016915.1|FK016915
EST:     GACTTGGACATGATGAAAAGTATTGTGGTTCATGTTTTGGTGCAGAAGAG                         TCAGATGAACACTGTTGTAATTCTTGCGAAGAAGTGCGTGAAGCATATAGG
genomic: GACTTGGACATGATGAAAAGTATTGTGGTTCATGTTTTGGTGCAGAAGAGgtaccttcga ... tctcatgcagTCAGATGAACACTGTTGTAATTCTTGCGAAGAAGTGCGTGAAGCATATAGG