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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGgcaagtgcacaatcttgatttccttgttcaccattccaccattctagtccttaaaataagaattcttactagttaatttaataattttattttaatcttctcaccctgataataatag

Basic information

species Glycine max
transcript GLYMA08G07670.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307419|gb|FK000761.1|FK000761
EST:     AACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAG                         GTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAA
genomic: AACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGgcaagtgcac ... ataataatagGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAA
EST: gi|163926925|gb|EH038506.1|EH038506
EST:     AACTTAGGCCATCTTATTTTGTTATCAATGGTTTTATTTACTTGATACAG                         GTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAA
genomic: AACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGgcaagtgcac ... ataataatagGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAA
EST: gi|298185371|gb|HO030584.1|HO030584
EST:     AACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAG                         GTCTGCCTCTG
genomic: AACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGgcaagtgcac ... ataataatagGTCTGCCTCTG
EST: gi|298173449|gb|HO016785.1|HO016785
EST:     AACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAG                         GTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGTTGGTTTGGAA
genomic: AACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAGgcaagtgcac ... ataataatagGTCTGCCTCTGGATTTACATGAGTGTAAGCAAAACTGCAGCTGGTTTGGAA