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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaagttttccatatctaaatattttgttcttagtttcatgtttgtaccttttcttgattataaattacagtcattctggtgagagacagacagacagaa...

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 5
TGTACTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaagttttccatatctaaatatt-ttgttcttagtttcatgtttgtaccttttcttg-attataaattacagtcatt-ctggtgagagacagacagacagaa-------------------------------------------------------------------------------------------
| |  | |  ||    ||||| |||||||||||||| || |||||||||||  | |||||||||||| |||||||||| || || || ||||||||  ||||||| |||     |     |||| |  |  ||   ||   |||| ||   | | ||| || ||  ||| ||    |  | |  |         |  |    |                                                                                           
TTTGTTATGCACGGCTGCATTCACTGCTTTTGAACTCCCACCAAATGGAGCCATCGGAACAAAAATTCTGGAATTCCTCTTTCATTCAAGGCCTGACTTGgtaaggtttttcacttggggtattatcatgattctcttgtcgtttttagtatcttttgtatcatgtatttcaaatttagcagacgcctcttttcccaatgtgatcatggtctaataactgtcaatctctgatgttttttgttgggctgttagagctatatcctaatatgatctataatttctgtaaaactctag

upper sequence: GLYMA08G06890.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 5
TGTACTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaagttttccatatctaaatattttgttcttagtttcatgtttgtaccttttcttgattataaattacagtcattctggtgagagacagacagacagaa-----
|||  | |||||  | || || || || ||||||||||| || ||||| ||| ||||||| |  |||||||| |||||||||||||| || |||||| |||| ||   ||  |       |||||  ||   | ||| ||  |  |   |    |  |||||| |  ||  |||||||  ||  |        ||  | |     
TGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGGGCTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgagaaatctcttctc---tatttcatt--aattttaatagtaatgattaccttgcattatatagcactatcattcttctgtcatgattttggattggaatctt