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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGgtttgtttctgtccctagtaacgatcttagaatgcctttattgtctgctatgctcatgtgtagccatcttatacagtttagttattgagcattgaagtaa...

Basic information

species Glycine max
transcript GLYMA08G06880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06880.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g44430.1 (Oryza sativa), 5'ss of exon 4
GCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGgtttgtttctgtccctagtaacgatcttagaatgcctttattgtctgctatgctcatgtgtagccatcttatacagtttagt--tattgagcattgaagtaa----
| |||||||||||||||| || |||||||| ||||||||||| || ||||||||||| ||||| ||||   ||||||||   |    | | ||| || |   ||| |||    ||  | |   ||  ||| || | |     ||  | | |  ||| |  ||   || ||||          
GTTAGTTGGTGTTGGTGAAGCATCATTTATAAGTCTTGCAGCTCCATTCATTGATGATAATGCTCCAGCAGCACAGgttc--tgtcattcttag-aatgcctttacaat---ctttctctgcactgagctgatatattatgttcaaacaaatcttatttttacacagtattgtttctgtgct

upper sequence: GLYMA08G06880.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G062024_T01 (Zea mays), 5'ss of exon 5
GCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGgtt-tgtttctgtccctagtaacgatcttagaatgcctttattgtctgctatgctcatgtgtagccatcttatacagtttagttattgagcattgaagtaa---
| | ||||| ||||| || ||||||||||| ||||| ||||| || ||||||||||||||||| || ||  | |||||| ||||  ||  |    ||  | ||||   ||  || || |||     ||   ||  |       |  ||   |    || |    | ||||  |  ||   
GTTTGTTGGCGTTGGCGAAGCTTCATTTATAAGTCTCGCAGCTCCATTCATTGATGACAATGCACCGGTAGCTCAGgttatgttgttgcac----tattgctcttgtgatttctctactgtaacacatatccaatttattttttaatacgtacgagagctgcatatcattatatcaatga

upper sequence: GLYMA08G06880.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G164743_T01 (Zea mays), 5'ss of exon 5
GCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGgtttgtttctgtccctagtaacgatcttagaatgcctttattgtctgctatgc---tcatgtgtagccatcttatacagtttagttattgagcattgaagtaa---
| | || || ||||| || ||||||||||| ||||||||||| || || |||||||||||||| |||||  | ||||||   |  || ||    ||  |  |||   ||  |||||  ||     || |   |  | | |   ||| |   | || |      |     ||| |    |   
GTTTGTGGGCGTTGGCGAAGCTTCATTTATAAGTCTTGCAGCTCCATTTATTGATGACAATGCACCAGTAGCTCAGgttc--tgttgccc----tattgcccttgagatttctttaccgtaacacatccaatttctttttgaacatgtaggatagctggacattattttattaagaagaata

upper sequence: GLYMA08G06880.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G64500.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGgt--ttgtttctg--------------tccctagtaacgatcttagaatgcctttattgtctgctatgctcatgtgtagccatct---tatacagtttagttattgagcattgaagtaa-----
| | ||||||||||||||||| |||||| | |||||||| || || ||||| || || |||||||||  |   |||||  ||| |||||              || | |   | |   |||||       |  |   |  | ||   ||  | ||  | ||   ||| ||  || |   ||  |  ||    |||     
GTTTGTTGGTGTTGGTGAGGCATCATTTGTAAGTCTTGCTGCCCCATTCATCGACGATAATGCCCCACATGATCAGgtagttgcttctggaatgtatctgttctctcaatccatggctttagataaaggatggtaattaat-tgtctataggaaggaagctgattattcacattggcacttttgtttttgtttaacccag

upper sequence: GLYMA08G06880.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 5'ss of exon 2
GCTAGTTGGTGTTGGTGAGGCTTCATTTATGAGTCTTGCAGCACCTTTCATTGATGACAATGCCCCAGTTTCACAGgtttgtttctgtccctagtaacgatcttagaatgccttt------attgtctgctatgctcatgtgtagccatcttatacagtttagttattgagcattgaagtaa
| | |||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||| | |||||||||||||  |  | ||       |  || |  ||||      ||  | |  | |  | || | ||  | | ||  ||| |||  || ||     ||||||   
GTTTGTTGGTGTTGGTGAGGCTTCATTTATAAGTCTTGCTGCTCCATTCATTGATGACAATGCCCCAGTTGCTCAGgtttgtttcttccttttgttttatgttgggactttctttctgtatatgtttttttttctttatatataaac-tgttggacacttt--ttctta--ttttgaagag-