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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGCACAAAAGAAGAACTGATGATGAAGGACAATGCTGGGAACACACCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTgtacgtaacattggattaatgagggtgttggttgtgtatttttttaagaacattcttgatgagacttgtggtaattaataaacattgttaaatttagttt...

Basic information

species Glycine max
transcript GLYMA08G06860.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06860.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0088g01260.t01 (Vitis vinifera), 5'ss of exon 5
TGCAGGCACAAAAGAAGAACTGATGATGAAGGACAATGCTGGGAACACACCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTgtacgtaacattggattaatgagggtgttggttgtgtatttttttaag--aacattcttga--tgagacttgtggtaattaataaacattgttaaatttagttt
||||||||||||  | ||||| ||| |||| |||||||||||    || |||||  ||||||||| ||||||||||||||||||||| ||  ||||||||||| ||||| ||| |   |||      ||  | ||  ||||||||||   || | ||  ||  | | ||   || |  || ||     ||  || | | |    
TGCAGGCACAAAGCAGGAACTAATGGTGAAAGACAATGCTGGATTTACTCCTGTTGAGCTTGCATCTGATAAAGGTCATCGGCATGTTGCCTCTTTCCTTgtatgtaactttgtaccgatgtttccctttatggtcaatttttttaatctaagaatcaggacttaaaacccatgatc-ttcattcctgtttatagaatgac---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23727525|gb|BU761796.1|BU761796
EST:     CTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTT                         TCAAATCAACAACGGGCTCATAGCAACTACTGGAAAGGGAAACTGTGTAG
genomic: CTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTCCTTTCCTTgtacgtaaca ... attttggcagTCAAATCAACAACGGGCTCATAGCAACTACTGGAAAGGGAAACTGTGTAG