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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAGgtaacctttgcacatttagttcccacaaagatgaaaagggatgtttatcatactttaaaatattcttcgttgcaatctcaattctgggaaatcttgagtt...

Basic information

species Glycine max
transcript GLYMA08G06620.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06620.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0361g00050.t01 (Vitis vinifera), 5'ss of exon 3
GCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAGgtaacc--tttgcacatttagttcccacaaagatgaaaagggatgtttatcatactttaaaatattct--tcgttgcaatctcaattctgggaaatcttgagtt
||  ||||  |  |  | ||||| ||||||||||||| ||| |||||| ||||||| || ||||||||||  ||||     |      |||  |  |||   | ||  | |      ||||  ||  | |   || | |   |    | ||    |       | || || ||  |
GCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGAgtaagtgactcttctgtttgctatccattgatatttataaa----tttaaaatggtgtgtgatttacaaataaaagaaaagggagcctcttggaagctagatat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345462|gb|BI971057.1|BI971057
EST:     GTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAG                         GTCACTGATTTTGGGCTTTCCAGACCAGAGATGATCAAACCTCGCACATCA
genomic: GTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAGgtaacctttg ... tactgagcagGTCACTGATTTTGGGCTTTCCAGACCAGAGATGATCAAACCTCGCACATCA
EST: gi|8283551|gb|BE021110.1|BE021110
EST:     GTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAG                         GTCACTGATTTTGGGCTTTCCAGACCAGAGATGATCAAACCTCGCACATCA
genomic: GTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAGgtaacctttg ... tactgagcagGTCACTGATTTTGGGCTTTCCAGACCAGAGATGATCAAACCTCGCACATCA