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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAAATGGAAGATTGTTGTTGGTCATCATGCCATTAGAAGTGTTGGGCATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaagctgaggatgaagaacatcgcctctctttcctagttcctttacttaactattctaattttatttcactttcaaatttcag

Basic information

species Glycine max
transcript GLYMA08G06090.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6502194|gb|AW203567.1|AW203567
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
EST: gi|16343572|gb|BI969167.1|BI969167
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
EST: gi|254331979|gb|GR843722.1|GR843722
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
EST: gi|31460751|gb|CD402779.1|CD402779
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
EST: gi|213598094|gb|DB977664.1|DB977664
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
EST: gi|192331088|gb|FK020308.1|FK020308
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
EST: gi|254331980|gb|GR843723.1|GR843723
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
EST: gi|9258428|gb|BE346575.1|BE346575
EST:     ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAG                         GCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC
genomic: ATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaa ... caaatttcagGCAAATAACATTGACTTCTACATGAACGGGCATGATCATTGTCTTGAGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAAAATGGAAGATTGTTGTTGGTCATCATGCCATTAGAAGTGTTGGGCATCATGGTGATACTCAAGAACTTATAAATCAGCTTCTCCCTATCCTTCAGgtaactaaaagctgaggatgaagaacatcgcctctctttcctagttcctttacttaactattctaattttatttcactttcaaatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT