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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTACTCAGCCTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGgtgtgttgtgttcttgagaaaatatgtagtgtttcatttgactgctgttgtttcttggttggtaatgttatgatgcttggttactgtag

Basic information

species Glycine max
transcript GLYMA08G05390.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05390.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0011g01240.t01 (Vitis vinifera), 5'ss of exon 5
TTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTACTCAGCCTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGgtgtgttgtgttcttgagaaaatatgtagtgtttcatt------tgactgctgttgtttcttggttggtaatgt--tatgatgcttggttactgtag
|||||||||||| || || || |||||||| |||| ||||||||||||||| |||  |||||| || || || |||||||||||||||||||||||||||||  ||||| |      | || |   |  ||| |  ||         |||  ||| | | ||  ||  || | |  |||| |          || ||
TTCAATTGGGCCACCTCCTGTCATTGCAAATAAAGTTCCTGCTACTCAGCCAGCCGGCAACGAGGTGTATTTGGTTTGGGATGATGAGGCAATGTCCATGgtcagttgtttctgaatgcaactccatgctgtctttttgtaatgcagctgtggttatatgttattttatattttggtatggtttacaaaatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345520|gb|GR851682.1|GR851682
EST:     CTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATG                         GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
genomic: CTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGgtgtgttgtg ... gttactgtagGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
EST: gi|192322566|gb|FK014687.1|FK014687
EST:     CTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATG                         GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
genomic: CTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGgtgtgttgtg ... gttactgtagGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
EST: gi|208259384|gb|GE053870.1|GE053870
EST:     CTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATG                         GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC
genomic: CTGCCACCAACGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGgtgtgttgtg ... gttactgtagGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGC