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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGgtacttctcttttttaaaattaatacagcatttgtagttcgttattgcttttataagactagccaatgtggatttgagggttgttaaaataccaatgatt...

Basic information

species Glycine max
transcript GLYMA08G04460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 7
AGAACTGTTCTTGCGATGCCAGAAAATGGAATTGGTTTGTTCCCAGATGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGgtacttctcttttttaaaattaatacagcatttgtagttcgttattg----cttttataagactagccaatgtggatttgagggttgttaaaataccaatgatt--
|||||| ||||||| |||||||||||||||||||| ||||| |||||||| || |||||||| ||||| || || |||||||| |||||||| |||||||    | || ||   | |||| |  |  ||  | ||| |    ||    |||||||     |   ||     | |||      || ||   || ||  | |   
AGAACTCTTCTTGCCATGCCAGAAAATGGAATTGGCTTGTTTCCAGATGTTGGATTTGCTTACATAGCAGCACAGAGTCCAGGAGAAGGATCAGTTGgtatgctttttgtt---atttaaga--gttttgatggtttgaggatggaaccttttatttagtttcacatcaaagtttttgtatctgctatc-tatcataggtcca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726516|gb|BW658083.1|BW658083
EST:     TGTAGGTTTTGCTTATATAGCGGCTCANAGTCCAGGGGAAGGATCCGTTG                         GTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCCTCAGATGCAA
genomic: TGTAGGTTTTGCTTATATAGCGGCTCAAAGTCCAGGGGAAGGATCCGTTGgtacttctct ... ttaattgcagGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCCTCAGATGCAA