Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtataggattttgttgacatatatttcgatagttttttcaaaatgtagccttgggccatgctatattcagaacttaaccttgtcttcctttatatttttt...

Basic information

species Glycine max
transcript GLYMA08G03760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G061419_T01 (Zea mays), 5'ss of exon 5
GATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtataggattttgttgacatatatt-tcgatagttttttcaaaatgtagccttgggcc---atgctatattcagaacttaaccttgtcttcctttatatttttt
||  || | || || ||||| || || ||||| ||||||||||| ||||| || |||||||||||||||||||| |   | |   ||    |  ||  |||||   | |||||   | |   | ||   |   |||||   ||  |  ||||  |||||     ||  || | |  
GACAATCTGGAGGCAAAGGTGGTCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaatgactttgtttccatcctcgatgtctatttcatggtctgttcatgacactgaatgctcattttgg--cttatgcttgtagatgttcctagtgt--

upper sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 5
GATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtat--aggattttgttgacat----atatttcgatagttttttcaaaatg--tagccttgggccatgctatattcagaact--------taaccttgtcttcctttatatttttt------------------------------------------------------------------
|||||||||||||||||||| || || |||||||| |||||||| ||||| || |||||||| ||||| |||||||  | |||||| ||    |    ||||||   |  | | | |    ||  |   |||    ||  || || ||| |||           | ||| ||||||   |||  ||||                                                                  
GATCATGTTGAAGCTAAGGTCGTGGTTGCTGGTTTATCAACAACATGTAGCCAGAAAATTCATAATCAGTTGgtatgtatgattttttttttctcccaatattttttttatctctcctttgtgactgttcttaaatca-actgtaatcacaaccatgaaaagctaacttatcttccaacatacatttttcatttttgttgttcattcattggctttcgctgaatgttcctgtttctggcttctttttcttgaag

upper sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 5
GATCATGTTGAAGCTAAGGTTGTTGTAGCTGGTTTGTCAACAACTTGTAGTCAAAAAATTCACAATCAATTGgtataggattttgttgacatatatttcgatagttttttcaaaatgtagcct-tgggccatgctatattcagaacttaaccttgtcttcctttatatttttt-
||| |||||||   |||| ||||||| |||| ||||||||||||||| ||||||||| |||| ||||| |||||||   || |  ||      |   ||  |   |  |   |||| |        | ||||  ||| |||  || |  ||||  | | | | || | | |   
GATGATGTTGATATTAAGATTGTTGTGGCTGATTTGTCAACAACTTGCAGTCAAAAAGTTCATAATCAGTTGgtatgtaatatgcttatggcttccctcact--ctgctgagaaatatgattcactgtccattttattttccaaaatccacctattttacttgtacactctaaa