Sequence
atgc intronic sequence ATGC exonic sequenceGTAGGAGATTTTGGACTAGCAAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTCATAGGAACATTTGGgtagtgccaatgtcttttttcccattttcttttgattagttgtaaaaaatgatgatgtaagccttggttattcacag
Basic information
species | Glycine max |
transcript | GLYMA08G03340.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G03340.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g51190.2 (Oryza sativa), 5'ss of exon 5
-----------------------GTAGGAGATTTTGGACTAGCAAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTCATAGGAACATTTGGgta-gtgccaat-------gtcttttttcccattttcttttga----ttagttgtaaaaaatgatgatgtaagcc-----ttggttattcacag
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AAGTATCGTCATATCGTGTGCAGGTCGGAGATTTTGGGTTGGCTAGATGGCAGCCTGATGGAGACATGGGTGTCGAAACAAGAGTAATTGGCACATTTGGgtaagtgctcagccatacaatccatcaatcctgtcctttgtgaggtgtaacttgtgaaaaaggcatatctgagaccattttcggccatgtgcag
upper sequence: GLYMA08G03340.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g02430.t01 (Vitis vinifera), 5'ss of exon 6
GTAGGAGATTTTGGACTAGCAAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTCATAGGAACATTTGGgtag-tgccaatgtcttttttcccattttcttttg-attagttgtaaaaaatgatgatgtaagcc-------ttggttattcacag
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GTTGGAGATTTTGGACTGGCAAGGTGGCAGCCAGATGGAGACATGGGAGTGGAAACACGAATAATTGGAACATTTGGgtaaacaagaaggacaagcttttggcttccatcaatactagctaaaaataatggcaagtcaaaccattaatcttacttttgtacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26269266|gb|CA820329.1|CA820329EST: CAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTCATAGGAACATTTGG GTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGA
genomic: CAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTCATAGGAACATTTGGgtagtgccaa ... ttattcacagGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGGAGATTTTGGACTAGCAAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTCATAGGAACATTTGGgtagtgccaatgtcttttttcccattttcttttgattagttgtaaaaaatgatgatgtaagccttggttattcacag
- - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - TGGAGA