Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGGAGTTTATGAGTGGTCAGGCTGCAACCCACTTCCACCAGAGATATGGCTTTTGCCCAAGTACGCCCCCATTCATCCAGgtttactaccttaccacctaattaatcataattaaatcaagcaactatatgcttgtacatagaatataatataataacgtcatttgccaaataatatattgtacag

Basic information

species Glycine max
transcript GLYMA08G03060.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03060.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0065g00030.t01 (Vitis vinifera), 5'ss of exon 6
GTACTTGGAGTTTATGAGTGGTCAGGCTGCAACCCACTTCCACCAGAGATATGGCTTTTGCCCAAGTACGCCCCCATTCATCCAGgtttactaccttaccacctaattaatcataattaaatcaagcaactatatgcttgta-----catagaatataatata-ataacgtcatttgccaa----ataatatattgtacag--------------------
||||||||||| |||||||||||||||||||||||  | || |||||| | |||||  | || ||   | | ||||||||||||||||| |   |  |  || |   || | ||| || ||     || ||   | ||| ||      | || |||||  | | |||  ||||     |||    | | || | |  || |                    
GTACTTGGAGTGTATGAGTGGTCAGGCTGCAACCCGTTGCCCCCAGAGTTCTGGCTGCTTCCAAAAATCTCTCCCATTCATCCAGgttttca--ccaaatacatttatatttata-ttgaaaagcacatcttgttccttctaatacttacagcatataccaaacatatagtcacaaatcaagatgaaagtagaatcaaccgtttatccatatgtgctgcag