1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGGAGCCAAACAAGGGGGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagtctgtaaatattatttatggaagtagattgctaagcattacactttctaattgttgtgtggcaatctctatccag
species | Glycine max |
transcript | GLYMA08G02940.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|18730292|gb|BM525797.1|BM525797
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|7924822|gb|AW830848.1|AW830848
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: GCAGTGCAAGGAAGCATTTTGAGTGGAGAGNGGTGGTGAAGAAACCAAAG ATATCCTTCTC-TGGGATGTGGCTCCCCTCACTCTCGGAATEST: gi|254328819|gb|GR833191.1|GR833191
genomic: GCAGTGCAAGGAAGCATTTTGAGTGGAGAG-GGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGG-ATGTGGCTCCCCTCACTCTCGGAAT
EST: GAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|15285743|gb|BI469634.1|BI469634
genomic: GAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCTTTATTGAAACTGTTGEST: gi|18734607|gb|BM528280.1|BM528280
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|9258803|gb|BE346950.1|BE346950
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|192328286|gb|FK022920.1|FK022920
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|13180745|gb|BG352085.1|BG352085
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: GGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|193337800|gb|FK302111.1|FK302111
genomic: GGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGAAGAAACCAAAG ATTATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTEST: gi|298166661|gb|HO010100.1|HO010100
genomic: TGAAGAAACCAAAGgtaccatagt ... ctctatccagA-TATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTT
EST: TGCAGTGCAAGGAAGCGTTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ATATCCTTCTCCTGGATGTGGCCCCCCTCACTCTCGGA
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagt ... ctctatccagATATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGAGCCAAACAAGGGGGTCAACCCTGATGAAGCAGTTGCCTATGGTGCTGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccatagtctgtaaatattatttatggaagtagattgctaagcattacactttctaattgttgtgtggcaatctctatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA