Sequence
atgc intronic sequence ATGC exonic sequenceTCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctcacttttttttttacttgctttagtgaacttttaccttcaaagatttaatgcaatgctcacacacaccctatacatactagaaaattgaga...
Basic information
species | Glycine max |
transcript | GLYMA08G02690.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G10960.1 (Arabidopsis thaliana), 5'ss of exon 5
TCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctcacttttttttttacttgctttagtgaacttttaccttcaaagatttaatgcaatgctcacacacaccctatacatactagaaaattgaga
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TCCAAACAATCTCATGCCCTTTGTACAACAAGTGGCTGTTGGTAGGAGACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGgtatgtacttgtcttttatgtt--ttcataaaacaagaagaggttttcaacattttgatctcatgttttgttttag------------------------
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01560.t01 (Vitis vinifera), 5'ss of exon 5
TCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctcacttttttttttacttgctttagtgaacttttacct--tcaaagatttaatgcaatgctcacacacaccctatacatactagaaaattgaga
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CCCAAACAACCTTATGCCCTTTGTGCAGCAAGTTGCTGTTGGCAGGCGACCTGCACTTACAGTTTTTGGAAGTGACTATTCAACAAAGGATGGTACTGGGgtatgttttc-cattgttagaaagttactctattcaacttctacttgtttgttggctgtttttagtctgtttttagatgtcacat-tgatatataattgcat
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01580.t01 (Vitis vinifera), 5'ss of exon 5
TCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctcacttttttttttacttgctttagtgaact-tttaccttcaaagatttaatgcaatgctcacacacaccctatacatactagaaaattgaga
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CCCAAACAACCTTATGCCCTTTGTGCAGCAAGTTGCTGTTGGCAGGCGACCTGCACTTACAGTTTTTGGAAGTGACTATTCAACAAAGGATGGTACCGGGgtatgttttgcattgtcagcata-ttacgttattcatctctttggttatttgcatgtgtgtctagatttgcttatgtagtaaatattgtgaactattaaat
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ35039 (Selaginella moellendorffii), 5'ss of exon 5
TCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctcacttttttttttacttgctttagtgaacttttaccttcaaagatttaatgcaatgctcacacacaccctatacatactagaaaattgaga
||||||||||| ||||| |||||||||||||| ||||| || ||| | || | ||||||| ||||| | ||| || ||| | ||||| || || || || | ||||||||| | ||||| ||| | || |||||||| | || | | |
CCCAAACAATCTGATGCCGTTTGTTCAACAAGTAGCAGTCGGAAGAAGACCCGAGCTGACAGTGTTTGGGAACGACTACCCAACGAGAGACGGAACAGGGgtcagtctcaatgcttttttttatc----------acattttattttctg----tacattgaatgctcatg-gtttcttacctctgacggcag-------
upper sequence: GLYMA08G02690.2 (Glycine max), 5'ss of exon 5
lower sequence: EFJ17435 (Selaginella moellendorffii), 5'ss of exon 5
TCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctcacttttttttttacttgctttagtgaacttttaccttcaaagatttaatgcaatgctcacacacaccctatacatactagaaaattgaga
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CCCAAACAATCTGATGCCGTTTGTTCAACAAGTAGCAGTCGGAAGAAGACCCGAGCTGACAGTGTTTGGGAACGACTACCCAACGAGAGACGGAACAGGGgtcagt-ctcaatgcattttttatc----------acattttattttctg----tacattgaatgctcatg-gtttcttacctctgacggcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4291681|gb|AI437654.1|AI437654EST: CTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGA GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCG
genomic: CTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctc ... tctttttcagGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCTGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAAACAATCTCATGCCCTTTGTTCAACAAGTGGCAGTTGGCAGACGCCCTGCATTGACAGTTTTTGGAAGCGATTATAAAACAACTGACGGCACTGGAgtatgttctcacttttttttttacttgctttagtgaacttttaccttcaaagatttaatgcaatgctcacacacaccctatacatactagaaaattgaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaccc