Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcataacaactgttttattgtgtggctctatcctttttgttagatatttgccgctgtattgctactgactttcatattgtttccaag...

Basic information

species Glycine max
transcript GLYMA08G02420.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcataacaactgt-tttattgtgtggctctatcctttttgttagatatttgccgctgtattgctactgactttcatattgtttccaag
|||||| || || ||| |||||||||| |||||||||||||||||||| || || ||||||||  | || || || || ||||| || ||  | || |||||   |   ||  ||   |      | || ||| |||  | | |        |||  |    ||        | | |    ||    | |   |||  |  
CTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgtttagctcgattttaatattcattttgttccaccaattccaaagtttcaaccatgtatacaagtagttcagtaccactagaacatttaaac-

upper sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcataacaactgttttattgtgtggctctatcctttttgttagatatttgccgctgtattgctactgactttcatattgtttccaag-------
|||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||| ||||| ||| |||| || || || ||||| || ||  | |||||||||     ||||  |||  ||  | | | | | |           |     | |    | ||  |    | |  |  ||| ||||  | || |||  |||       
CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtac---ctttggccatctcattt-tctcaatataccatgtcgcaccaaacgcttttgagttcacatcatgtc-cagctgccttt--ttttttttgaaagaaaaacc

upper sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcataacaactgttttat-tgtgtggctctatcctttttgttagatatttgcc-----gctgtattgctactga---ctttcatattgtttccaag-----------------------------------------------
  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||||||||  |  | || || |  ||||| || || ||||||||||| ||  |    | |  |    || | |||  | ||| |  | ||  |  |      |||  | |      | |  |   ||  |||   ||    | |  | ||| |                                                
TGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGCAATAAACTTCCAGAGgttaaattaaaatccccatttgctctcttaaatttgtagtaccatgttcctaagcttataccttcttattggtttcaaaactcttgaaacctcatttgtcttgtcctaagtatttttagttttgttctaaaggatcttttcttgaaatgtgtgtag

upper sequence: GLYMA08G02420.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattttgtgcataacaactgttttattgtgtggctctatcctttttgttagatatttgccgctgtattg--ctactgactttcatattgtttccaag
|||||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| || | ||||| || ||||||||||| ||||||||||||  |  | |   || |     | |||| ||     | |   |  ||| | |     | ||  |  |  ||||  |   | |  || || || ||| |   
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctctt--caaagttcatattttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208166292|gb|GD965484.1|GD965484
EST:     ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193662848|gb|FK604840.1|FK604840
EST:     GTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
genomic: GTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|7286248|gb|AW598735.1|AW598735
EST:     ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|7286055|gb|AW598542.1|AW598542
EST:     ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGgtaaatattt ... ctaattgtagATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT