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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagtatagcagttcttattctgtgatgttagatatttgttgctgaattgtttttactgttgactctcgtattgctctcactcaaata...

Basic information

species Glycine max
transcript GLYMA08G02390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagt-atagcagttcttattctgtgatgttagatatttgttgctgaattgtttttactgttgactctcgtattgctc--tcactcaaata
|||||| || || ||| |||||||||| |||||||||||||||||||| || |||||||||||  | || || || || ||||| || ||  | || |||||      |    |    ||   | |  | ||| |||      |  |      |  | ||   | | |||   |   ||  |||   ||    || | |||  
CTCTGGAGGTGTTGTGCTGGCTTCTCGAGATGGAAAGATTGTGTGTGAGAACACACTTGATGCCAGGCTGGAAGTTGTCTTCCGCAAGAAATTACCGGAGgtgccttcgtttagctcgattttaatattcattttgttccaccaattccaaagt-ttcaaccatgtatacaagtagttca-gtaccactagaacatttaaac-

upper sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G030167_T01 (Zea mays), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagtatagcagtt-cttattctgtgatgttagat-atttgttgctgaattgtttttactgttgactctcgtattgctctcactcaaata---
|||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||||||||| ||| | || || || |||||||| || ||  | |||||||||         ||   ||  || || || | | |   ||||   |  |   | |  ||| ||    | |       ||  | | ||  | |      || |   
CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacct-----ttggccatctcattttctcaatataccatgtcgcaccaaacgcttttgagttcacatcatgtccagctgcctttttttttttgaaagaaaaacc

upper sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G070360_T01 (Zea mays), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagtatagcagttcttattctgtgatgttagatatttgttgctgaattgt--ttttactgttg--actctcgtattgctctcactcaaata----------------------------------------------------------------------------------------------
|||||| ||  | || ||||||||||| |||||||||||||||| ||| | ||||||||| ||  | || || || |||||||| || ||  | |||||||||     |  |     ||        |    |||| |||  |    |||     | | ||||  |||   |  ||  |  |  |||  | | |   | | |                                                                                                
CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttggccatctcattttttcaatatacctgt-atgaaaaccttttagcagtaacttgtcatttagttactgtaaaacaggtagagtttttttttataggagaaaaccattcttctgttttatgagcaattaattattagtttatcacgaaatcttcatagaaccaagttaacacaacgctcctacccttgcag

upper sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G64200.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagtata-gcagttcttattctgtgatgttagatatttgttgctgaattgtttttactgtt-----gactctcgta-------ttgctctcactcaaata--------------------------------------------
  | || || ||||| ||||||||||||||||| || || ||||||||||| || ||||||||  |  | || || |  ||||| || || ||||||||||| |||   || |    ||  ||  |  | | | |||  |   |  |   |   ||| |    || ||| || |      ||||| | |       |||   |  |  || ||                                            
TGCAGGAGGAGTGGTTTTGGCTTCTCGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGCAATAAACTTCCAGAGgttaaattaaaatccccatttgctctcttaaatttgtagtaccatgttcctaa-gcttataccttcttattggtttcaaaactcttgaaacctcatttgtcttgtcctaagtatttttagttttgttctaaaggatcttttcttgaaatgtgtgtag

upper sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G11150.1 (Arabidopsis thaliana), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgta---aaaaagaactgagtatagcagttcttattctgtgatgttagat-atttgttg-ctgaattg---tttttactgttgactctcgtattgctctcactcaaata-----
|||||| || || ||||| |||||||||||||| || || ||||| || || ||||||||||| ||||||||||| |  |||||||  || || |||| ||||   ||||  || |   ||  |||    ||| | ||| ||| |  || | |   || ||   ||    |||||||| |||  ||||  ||| | |||| |    |      
CTCTGGAGGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaacaaattctctaccgcatagattact-tgttatgatccatcactcactgtctaggtttacttttttact-ttggttctctgatt-cactcattgttgttaacag

upper sequence: GLYMA08G02390.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g01000.t01 (Vitis vinifera), 5'ss of exon 5
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagtatagcagttcttattctgtgatgttagatatttgttgctgaattgtttttactgttgac-tctcgtattgctctcactcaaata
|||||| || ||||||||||||||||| ||||| || ||||| ||||| || || ||||||||| |  | ||||| || ||||||||||| ||||||||||||           |   |   | || || |||   | |  | | | | | |  |  |||| |   |    | ||| | || | ||  | | | |      
CTCTGGAGGTGTGGTGTTGGCTTCTCGAGATGGGAAAATTGTATGTGAGAACACCCTTGATGCAAGATTGGATGTTGTATTCCGTAAAAAACTTCCAGAGgtatttgctcttcaaagttcata-ttttttttcccagttacttggtttatataccccaattatcagtcaattggacatttcatctttatgttatttgctgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296467|gb|FG991617.1|FG991617
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGA-GATTT-GATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|33388901|gb|CA852108.1|CA852108
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|207730189|gb|GD706923.1|GD706923
EST:     GATGTAGTGTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAATCAGCTCTTTGGACAAGTTGTTGCTTGAAGATTTTGATTGTAT
genomic: GATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|192304326|gb|FG996452.1|FG996452
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|209726265|gb|BW680202.1|BW680202
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|208270211|gb|GE069063.1|GE069063
EST:     CGTCTTGATGTAGTTTTCCGT-AAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: CGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193383548|gb|FK346795.1|FK346795
EST:     ATGTAGTTTTCCGT-AAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|254344833|gb|GR855597.1|GR855597
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|120493334|gb|EH221501.1|EH221501
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGATCTTTGGACAA
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAA
EST: gi|209729717|gb|BW669817.1|BW669817
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|31309154|gb|CD394357.1|CD394357
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193404291|gb|FK367815.1|FK367815
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCCTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193326093|gb|FK288180.1|FK288180
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|209700830|gb|BW661261.1|BW661261
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|192304325|gb|FG996451.1|FG996451
EST:     -TACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAA-GCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|192327865|gb|FK022438.1|FK022438
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|120533850|gb|EH261983.1|EH261983
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGATCTTTGGACAAATTGTTGCTTGAAGATTT-GATCGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|11689161|gb|BF596837.1|BF596837
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTCTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|21995201|gb|BQ786729.1|BQ786729
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193308323|gb|FK277314.1|FK277314
EST:     TTGATGTAGTTTTCCGTTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: TTGATGTAGTTTTCCG-TAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|31311729|gb|CD396932.1|CD396932
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|31307235|gb|CD392438.1|CD392438
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|21286054|gb|BQ473925.1|BQ473925
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|209716816|gb|BW682258.1|BW682258
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|208159383|gb|GD954278.1|GD954278
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|209720340|gb|BW669274.1|BW669274
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|208161265|gb|GD963439.1|GD963439
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193560285|gb|FK516736.1|FK516736
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|254342000|gb|GR853137.1|GR853137
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|31475693|gb|CD417721.1|CD417721
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193405648|gb|FK374733.1|FK374733
EST:     TTGATGTAGTTTTCCGTTAAAAAGACTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTA
genomic: TTGATGTAGTTTTCCG-TAAAAAG-CTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTA
EST: gi|120493248|gb|EH221415.1|EH221415
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|192331491|gb|FK022738.1|FK022738
EST:     -TACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAA-GCTTCCAGAG                         ATCCGAAAGCAGCTCTTTG
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTG
EST: gi|254338603|gb|GR845746.1|GR845746
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|8827772|gb|BE211502.1|BE211502
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTACAACGCTTCCAGAG                         ATCCGGAAGCAGCTCTTTGGACA
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACA
EST: gi|193577261|gb|FK537506.1|FK537506
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|9203280|gb|BE329504.1|BE329504
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|207829624|gb|GD803192.1|GD803192
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|18733251|gb|BM527503.1|BM527503
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|254338602|gb|GR845745.1|GR845745
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193394107|gb|FK360254.1|FK360254
EST:     TTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: TTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|23728894|gb|BU762516.1|BU762516
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAG
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAG
EST: gi|193336898|gb|FK302376.1|FK302376
EST:     TTGATGTAGTTTTCCGTTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: TTGATGTAGTTTTCCG-TAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|151393563|gb|EV263438.1|EV263438
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|26047921|gb|CA784561.1|CA784561
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATT
EST: gi|38192295|gb|CF921501.1|CF921501
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|57575472|gb|CX548447.1|CX548447
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|193347738|gb|FK313498.1|FK313498
EST:     TTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: TTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|13563524|gb|BG551744.1|BG551744
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTG
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTG
EST: gi|31464448|gb|CD406476.1|CD406476
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|31470486|gb|CD412514.1|CD412514
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT
EST: gi|254344832|gb|GR855596.1|GR855596
EST:     ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAA-GCTTCCAGAG                         ATCCGAAAGCAGCTCTTTGGACAAATTGT-GCTTGA-GATTTTGAT-GTAT
genomic: ATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaaga ... cttattgcagATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGAAGATTTTGATTGTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACACTTGATGCACGTCTTGATGTAGTTTTCCGTAAAAAGCTTCCAGAGgtaaaaaagaactgagtatagcagttcttattctgtgatgttagatatttgttgctgaattgtttttactgttgactctcgtattgctctcactcaaata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac