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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAGCTGTTGCCGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttttctctcttctcgtctttcaagatcttgaactgctgaacacttgctgatatctcagcttgaaaatcttgctcaaatgtcgctctctgactg...

Basic information

species Glycine max
transcript GLYMA08G01750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01750.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g27790.1 (Oryza sativa), 5'ss of exon 5
GTTAAAGCTGTTGCCGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttttctctcttctcgtct--ttcaagatcttgaactgctgaacacttgctgatat------ctcagctt----gaaaatcttgctcaaatgtcgctctctgactg--------------
|| ||||| ||||  ||||||||||| ||||||||| | || |||||||| ||||||||||||| | | |  |||||||| |||||||| |||||||||||   ||     || ||     |  || | ||| |    |  |   | ||  | ||      || | |||    |||    |     |||| |   |   | | |               
GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTCAGCCAAAGTGGGCACTGAGTGACATACCAATAATGCCCAAGgtagttttggccttagaccttgtaaagctttagtttttgtatgaattcagtgtcgcgtacatatttaacttaacttacaagaagggttcctataaattttaatgcttcagttttttttctttatag

upper sequence: GLYMA08G01750.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os05g03820.2 (Oryza sativa), 5'ss of exon 5
GTTAAAGCTGTTGCCGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttttctctcttctcgtct--ttcaagatcttgaactgctgaacacttgctgatat------ctcagctt----gaaaatcttgctcaaatgtcgct--ctctgactg-----------
|| ||||| ||||  ||||||||||| ||||||||| | || |||||||| ||||||||||||| | | |  |||||||| |||||||| |||||||||||   ||     || ||     |  || | ||  |    |  |   ||||  | ||      || | |||    |||    |     |||| |   |   || || ||           
GTCAAAGCAGTTGGAGAGGAAATGGGGATTGGATTTCTCGGAATTGGTTTTCAGCCAAAGTGGGCACTGAGTGACATACCAATAATGCCCAAGgtagttttggccttagaccttgtaaagctttagcttttctatgaattcagtgttgcctacatatttaacttaacttacgagaagggttcctataaattttaatgcttcagattgtttctttatag

upper sequence: GLYMA08G01750.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G111579_T01 (Zea mays), 5'ss of exon 4
GTTAAAGCTGTTGCCGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttttctctcttctcgtctttca--agatct--tgaactgctgaacacttgctgatatctcagcttgaaaatcttgctcaaatgtcgctctctgactg
|||||||| ||||  |||||||||||||| |||||| | ||| |||| || |||||||| |||| | | |  |||||||| ||||||||||||||| || | | || |   || |      |  ||| ||  || | || |||  |||  || |  |     |  |     |  | || ||     ||||| |    
GTTAAAGCAGTTGGAGAGGAAATGGGAATAGGATTTCTTGGGCTTGGCTTTCAGCCAAAATGGGCACTGAGTGACATACCAATAATGCCAAAGgtaattctgtcctttaaccttggagaagagcagacctggtgcagtgttgagaactgtctcacttagtcaccaggttggcaggttcgaagcagcctctccg----

upper sequence: GLYMA08G01750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 5'ss of exon 5
GTTAAAGCTGTTGCCGAGGAAATGGGAATTGGATTTTTGGGGATTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttttctctcttctcgtctttcaagatcttgaactgctgaacacttgc-tgatatctcagcttgaaaatcttgctcaaatgtcgctctctgactg-
|||||||| ||||| ||||||||||| |||||||| || || |||||||||||||| || ||||  || ||||| |||||||||||||| |||||| |   | |  ||||     |  |    ||  | ||  |||   ||     | ||  |  |  | || |||| |  |     ||| |  | |  | ||| 
GTTAAAGCAGTTGCAGAGGAAATGGGGATTGGATTCTTAGGTATTGGTTTCCAGCCCAAATGGGCTATTAAAGATATACCTATAATGCCCAAGgtattacctattcctctatctatgatcagtgaattggatatgcaataccaaaacgtggcaggt-ggtttaaaaaacaagtggggatggc-ttttgagcctgt