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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGGAAAACTTCCTTTAGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGgtgtgtctatattcttctttgctgaatgcttttatcctagtattctcaggaagcatttcatatcattaatcataaaatgtaaatgcactattatgtttgttctggcag

Basic information

species Glycine max
transcript GLYMA08G01040.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 5
TAAAGGAAAACTTCCTTTAGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGgtgtgt--ctatattcttctttgctgaat-gcttttatcctagtattctcaggaagcatttcatatcattaatcataaaatgtaaatgcactattatgtttgttctggcag
 || ||  ||| ||  |     ||||||||||| ||||| ||||||||| ||||||||||||| ||||| || ||||||||  | |||   || ||||||||  ||  ||   ||||||||   |||||  || || |  ||  |       ||    |   |   |||   |  |   ||| |                           
GAATGGTGAACATCTATACCGGGAACAGCCTTCGAGAACTCTTTTTGTTCGAAACATTAATAGTAATGTTGAGGACTCTGAATTGAAGCTCCTATTTGAGgttagttacttatttcttcttctttgaatcactcttctgttacaacagatttgacatctgagaagccatctgttcttctatgcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193619658|gb|FK570854.1|FK570854
EST:     GAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAG                         CAATATGGAGATATCCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTT
genomic: GAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGgtgtgtctat ... gttctggcagCAATATGGAGATATCCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTT