Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTAGGTGGCGCTTCTGGAAAGTTTCCACAATATTATAATGCATATTATGATTTGGTGgtaggtacagataagtgaagtacaaccctgagatttccttatgattctgatatagattatttgattaataagtggcagctagactattgttttagcagag...

Basic information

species Glycine max
transcript GLYMA08G00750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00750.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G135568_T01 (Zea mays), 5'ss of exon 4
AAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTAGGTGGCGCTTCTGGAAAGTTTCCACAATATTATAATGCATATTATGATTTGGTGgtaggtacagataagtgaagtacaaccctgagattt--ccttatgattctgatatagattatttgattaataagtggcagctagactattgttttagcagag
  | ||    |||||||| ||  |||||||||| ||||||||||| ||||| |||   | ||||||||| || || ||| | ||||| |||||  |||||||||||||  |||  |  |||      ||     ||  | |  |   | |  |      ||||||  |    | |    |    ||| || ||| |     |
TCGAGAAAAAATATTTCTTCTGTTAGATGCCACGCAAACATCCCTTGGTGGAGCTAAAGCAAAGTTTCCTCAGTACTATGAGGCATACTATGAGCTGGTGgtaggtacc-atatttacagttttcttcttttgcttggcttcctttgtttcctcccatgtatttgtattgggaattttggtagcactgtt-tttaactcttg

upper sequence: GLYMA08G00750.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 5'ss of exon 4
AAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTAGGTGGCGCTTCTGGAAAGTTTCCACAATATTATAATGCATATTATGATTTGGTGgtaggtacagataagtgaagtacaaccctgagatttccttatgattctgatatagattatttgattaataag-tggcagctagactat-tgttttagcagag
| | |||  ||||||||| ||  ||||||||||||| ||||| || ||||| ||||||| |||||| || ||||| || | |||||| |||||| | |||||| |||   |   |     |       |  | | || || |   |  |||   | |  |||  | || |   | ||  ||  |  || | || |  ||   
ACGAGAGAAGATATTTCTTCTTTTAGATGCCACACAGACATCACTTGGTGGAGCTTCTGCAAAGTTCCCTCAATACTACAGTGCATACTATGATCTAGTGgtaagtatgcactggcatcttgtctttgtatgctctctttgta--tgagatgctgttagtttcttcaaaagtcttgcttctgaaggatctattctctcattt