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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAgtatgttgccctaatggaaccttcaaattttgatttgaaaaaaaaaagtttgatgacatgggaatggttgaactgtcagtatttagtattgttgtttgtctactgacag

Basic information

species Glycine max
transcript GLYMA07G40290.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40290.3 (Glycine max), 5'ss of exon 5
lower sequence: AT2G23390.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAgtatg----ttgccctaatggaaccttcaaattttgatttgaaaaaaaaaagtttgatgacatgggaatggttgaactgtcagtatttagt-attgttgtttgtctactgacag----------------------------------------------------
|||||||||||||||||||||||   ||| ||||||||||||||||||||||||| |     ||  | |   |  |  ||    |||    |    |  | | | | ||      || | ||  |  |  |      ||| | | |    |  | ||| | ||   |                                                    
GCTAGGCACTGGGATTCCTTCTATGATTTCTACAGGAACACAACTGATAACAAgtttagtctttatctttgagacatttttgtttttcttatcattagtacacattatgtgtctttgtgcataataaacatacttacattcaattacctgtcatcgtcaagtgtatgcattacctgtgtttgtcctttcacatgcttaacgatttccggctaattttag

upper sequence: GLYMA07G40290.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 9
GCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAgtatg-ttgccctaatggaaccttcaaattttgatttga--aaaaaaaaagtttgatgacatgggaatggttgaactgtcagtatttagtattgttgtttgtctactgacag--------------------------------------------------------------
|||| ||||||||||||||| |||   || || |||||||| |||||||||||||||| |     | ||   ||| |    || |||| |    | ||  ||| | | || |  |   ||| ||| | |  |||  || |  |  | || ||| || |   |                                                                 
GCTAAGCACTGGGATTCCTTTTACAAGTTCTATAGGAACACCACTGATAACAAgtatggtcaatatcatttgaccgt----ttctgatctctttacaatgaaattcttat-atttttaaattgtt-atcaatcaacatgttattattttctttatccatgaaatatgttgaatcgtttgaaatgcttgaacttgtcgcattctaaagacgctgttgatttatcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318530|gb|FK008274.1|FK008274
EST:     AGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAA                         ATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAA
genomic: AGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAgtatgttgcc ... ctactgacagATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAA