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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACTGGTTTGAGCATATTGATTGCCAAAAGGAATCCATCGCTTGTCACCACATTTTCCCTCCTTTCATGTGGATATATCCTTAGCTCTTATAGAGAGgtttgtttttgcatatgtaatgatgatgcttatctagctgtactttcaatctggtgattatgtatctaatgtttaatgcattaatag

Basic information

species Glycine max
transcript GLYMA07G40210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40210.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv12s0035g01870.t01 (Vitis vinifera), 5'ss of exon 7
AGGAACTGGTTTGAGCATATTGATTGCCAAAAGGAATCCATCGCTTGTCACCACATTTTCCCTCCTTTCATGTGGATATATCCTTAGCTCTTATAGAGAGgtttgtttttgcatatgtaatgatgatgcttatc--tagctgtactttcaatctggtgat-----------tatgtatctaatgtttaatgcattaatag
 |||||||| ||||| ||  ||||  ||||||| ||||| || || || ||||||||| | |||||||||||||||||| || | || |||||   ||||||||| ||||| ||  | | | |   | ||| |   |   |||| |||  | |   | |                   |                     
GGGAACTGGATTGAGTATCATGATCTCCAAAAGAAATCCGTCACTGGTGACCACATTTGCACTCCTTTCATGTGGATATGTCTTAAGTTCTTACCAAGAGgtttgattttgtatgagcagtaaaattcctttttcttttttgtattttttaccaaatcacaccccccccccccccccccccccnnnnnnnnnnnnnnnnn
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7233755|gb|AW569098.1|AW569098
EST:     CCACATTTTCCCTCCTTTCATGTGGATATATCCTTAGCTCTTATAGAGAG                         GTAAAATCTGTGGTTNTGCACACA
genomic: CCACATTTTCCCTCCTTTCATGTGGATATATCCTTAGCTCTTATAGAGAGgtttgttttt ... gcattaatagGTAAAATCTGTGGTTTTGCACACA