1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTATATCTTGTTTCGAGTTACTCAATTATACACTGGTCGTCTTTAAATTCCAAGAGATCTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAGgtaattttttttttttttttaatgctttgttataaaaaaggatcacttagaaggtagaaaagacatctaagcttttaaatgcctgttggtaacag
species | Glycine max |
transcript | GLYMA07G40060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGAGATACTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|151396369|gb|EV266246.1|EV266246
genomic: CAAGAGAT-CTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAGgtaatttttt ... ttggtaacagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACAEST: gi|193400537|gb|FK369690.1|FK369690
genomic: CCAAGAGATCTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAGgtaatttttt ... ttggtaacagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
EST: CCAAGAGATCTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAG AAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
genomic: CCAAGAGATCTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAGgtaatttttt ... ttggtaacagAAACATCCTGGAAGCCTTTTGGAAGGATTTACTCAGACACAGATTAGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATATCTTGTTTCGAGTTACTCAATTATACACTGGTCGTCTTTAAATTCCAAGAGATCTGAAATCCTAAATGTATCAGGGCATGTAGCTCCGTGTGAGgtaattttttttttttttttaatgctttgttataaaaaaggatcacttagaaggtagaaaagacatctaagcttttaaatgcctgttggtaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC