Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctctttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatcttttcggaaactaccaatacgtgtccattcctttgtgtggtag
Basic information
species | Glycine max |
transcript | GLYMA07G40050.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 5'ss of exon 4
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctct-ttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatcttttcggaaactaccaatacgtgtccattcctttgtgtggtag
|||||| || || |||||| ||||||| ||||||||||| ||||| || || |||||||| |||| | |||||| ||||| || |||||||||||||| ||| | ||| | | | |||| || | ||||| || | |||| || || || ||| |
TGCTGTTATACTGCTTCCTGCAAATATCACTGTTTTTACACTTGATTTTTCCGGGTCAGGTCTATCAGGTGGAGATTATGTAAGCCTTGGTTGGCATGAGgtatataatcagtatcacttttgttcttctacatttat--atcatggataattacatta--ttctgaaattttctag--------------------------------------------
upper sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os06g40730.1 (Oryza sativa), 5'ss of exon 4
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctctttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatc-ttttcggaaactaccaatacgtgtccattcctttgtgtggtag
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AGCTGTCATACTTCTCCCTTCAAATATCACCCTCTTTACACTTGACTTTGCAGGGTCAGGGCTATCAGGTGGAGAGTATGTCAGCCTTGGTTGGCATGAGgtacatagtcatcata-attttttgaaaacacactcttattgttttgcaattgcactaatctgataaaaatacaatcactctcag------------------------------------
upper sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G081642_T03 (Zea mays), 5'ss of exon 4
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctctttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatcttttcggaaactaccaatacgtgtccattcctttgtgtggtag
||||| || ||||||||||||||||| |||||||| || |||||||| || |||||||| |||| | || || ||||| ||| | ||||||||||| ||| | ||| | || | ||| || | || ||||| ||| | | ||| | | || ||||||| | ||| | |||| | | | | ||
CGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGGGATTATGTCAGTTTGGGTTGGCATGAGgtatataatcagt--atcaacgttgttctttgcttatt---------ctac--attcatattttcggagatcacatctttctg-aaattcccaaca---atttacttctag---------
upper sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G092895_T01 (Zea mays), 5'ss of exon 4
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctctttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatcttttcggaaactaccaatacgtgtccattcctttgtgtggtag
||||| || ||||||||||||||||| || ||||||| |||||||| |||| ||||| |||| |||||| ||||| || |||||||||||||| || || | | ||| || ||| || | | | | |||| | | | ||| | || | | | || | || |||
CGCTGTCATACTTCTTCCTTCAAATATCACCCTTTTTACACTTGACTTTGCGGGATCAGGGCTATCAAGTGGAGATTATGTCAGCCTTGGTTGGCATGAGgtgcgta--cacactataaat-tttgtagcaacat-tcatattctattttaaatggcaagtcctgaaaaatattaccactgtggta-ctcccag--------------------------
upper sequence: GLYMA07G40050.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G17150.2 (Arabidopsis thaliana), 5'ss of exon 4
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctctttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatcttttcggaaactaccaatacgtgtccattcctttgtgtggtag
| | | |||| || || || || || |||||||| |||||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||| || ||| || | | | | | | || | || || ||| || | | | | | | ||
AGTTATGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTATCTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGgtgtgttttcgggtcttactttctcaaggttcttcgtcttttccttatc--taaattttttcttcttaaacttaagctag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193727548|gb|FK664472.1|FK664472EST: CGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAA AAAGATGATCTCAAGATGGTGGTGTCATATTTGAGGAGCAAACAAACAAAT
genomic: CGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatc ... tgtgtggtagAAAGATGATCTCAAGATGGTGGTGTCATATTTGAGGAGCAA-CAAACAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTTAGTCTTGGTTGGCATGAAgtaagttatctctttatgcatgtttttatctgtttattaatttctggctattaagttgagtttctgcatattccatcttttcggaaactaccaatacgtgtccattcctttgtgtggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA