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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgcttttctttcatgaattgttgatacttactacttgtgttttctaataaaagatgttttttgaaatctgacaaaatctgctgcgggtagtagggag...

Basic information

species Glycine max
transcript GLYMA07G39870.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 5'ss of exon 5
TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgcttt-tctttcatgaattgttgatacttactacttgtgttttctaataaaagatgttttttgaaatctgacaaaatctgctgcgggtagtagggag--
|| |||||||||   | || | ||| ||  |||||||| ||||||| || ||||| |||||||||||||||||||| || || ||| |||| || || ||||  ||    | ||   |   ||||  || || |      |     |  ||  | |   |   ||| |    || ||||   |  |  | |  | |  | |  
TGTTTGCAGCACAGTCAATTCTATTGGGCATCAATGATATTGTTGTAGCCGGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaagtgttcttttggttgtacatcctgatacagcgcacaataaaagtacaacagaaatttaa---ttggcaaacaatagtatgcgaggaaaagtgta

upper sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 5
TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgcttttctttcatgaattgttgatacttactacttgtgttttctaa--taaaagat-gttttttgaaatctgacaaaatctgctgcgggtagtagggag
|| |||||||||   | || ||||| ||| |||||||| |||||||||||||||| |||||||||||||| ||||| || |||||| |||| || || ||||  ||  || || | ||   ||   ||| | | || | | | |   |||   ||| ||| || ||  |  || ||  | |  |      |  || |      
TGTTTGCAGCACAGTCAATTCAATTGGGTATCAATGATATTGTTGTGGCTGGTGGCATGGAAAGCATGTCCAATGCCCCAAAGTACATTGCTGAAGCTAGgtatgcaattattacttgg--tggatatattcaata-tcgagctgcataaaccaaatgatagtcttaagttatttggtagatacatgcatgcttacttatctt

upper sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 3
TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgc---ttttctttcatgaattgttgatacttactacttgtgttttctaataaaagatgttttttgaaatctgacaaaatctgctgcgggtagtagggag
|| |||||||||   | || ||| | ||| |||||||| |||||||||| ||||| |||||||||||||| ||||| || |||||| |||| || || |||| | |   | || |||  || ||   |   |  |    ||    |   | ||| | |    | ||  |  || |     |  |      |  || |     |
TGTTTGCAGCACAGTCAATTCAACTGGGTATCAATGATATTGTTGTGGCAGGTGGCATGGAAAGCATGTCCAATGCCCCAAAGTACATTGCTGAAGCTAGgtacacaagtattattttgtggatacatctaatatcaggctgaaataaccgaattataa---tcttaagttatttagtggatacatgcctgtttacttatttg

upper sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G085474_T04 (Zea mays), 5'ss of exon 5
TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgct--tttctttcatgaattgttgatacttactacttgtgttttctaataaaagatgttttttgaaatctgacaaa-atctgctgcg-ggtagtagggag-
|| | || ||||   | || ||  | ||| |||||||| |||||||||| ||||| |||||||||||||| ||||| || |||||| |||| || || ||||  ||    | || || |||    |  |    |  | |  |||  ||  |  |||  || | ||  |  || | ||| | |   ||||     |  |    |  
TGTTCGCCGCACAGTCAATTCAGCTGGGTATCAATGATATTGTTGTGGCAGGTGGCATGGAAAGCATGTCCAATGCCCCAAAGTACATTGCTGAAGCTAGgtatgcaaagtactgtcttgatacatccag---tggtgccggtgcatt--accaaagcatatcttgagttatttcacatataggagctgtttacttatttaaatt

upper sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0089g00570.t01 (Vitis vinifera), 5'ss of exon 2
TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgcttttctt-tcatg-aattgttgatacttactacttgtgttttctaataaaagatgttttttgaaatctga-caaaatctgctgcgggtagtagggag------------------------------------------------------------------
   |   ||   | |   ||       ||   |||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| | ||| || | ||| ||||||    |||||  ||   | ||   || |   |   ||   || |  || ||| || |    || ||| | ||   || || ||  ||||   |                                                                   
-TTTAAGAGGGTTGAGAGTAT------GTAAAAATGATGTAGTTGTGGCTGGTGGCATGGAAAGAATGTCTAATGCGCCTAAATACCTAGTAGATGCAACgttagctttttgggtcatgtgatcaattatgtctattgagttgcttgcttagtttaacatgattctcagtatgtgaacgaagcatgttg-ggccagtacatattgttgccgttcttactaatagggagaagtgtctatgtatctaagctgactctgagcttataaacag

upper sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv18s0089g00590.t01 (Vitis vinifera), 5'ss of exon 4
-TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgcttttctt-tcatg-aattgttgatacttactacttgtgttttctaataaaagatgttttttgaaatctga-caaaatctgctgcgggtagtagggag
 || | |    |        | | | || |   |||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| | ||| || | ||| ||||||    |||||  ||   |  |   || |   |   ||   || |  || ||| || |    || ||| ||||   || || ||  ||||     
GTGATAGTTTAAGAGGGTTGAGAGTATG-TAAAAATGATGTAGTTGTGGCTGGTGGCATGGAAAGTATGTCTAATGCGCCTAAATACCTAGTAGATGCAACgttagctttttgggtcatgtgatcaattttgtctattgagttgcttgcttagtttaacatgattctcagtatgtgaacaaagcatgttg-ggccagtacat--

upper sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 4
TGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgcttttctttcatgaattgttgatacttactacttgtgttttctaataaaagatgttttttgaaatctgacaaaatctgctgcgggtagtagggag--
|| |||| ||||   | || ||||| ||| |||||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| | | | || ||||| |  |     | | ||||  | || |           ||   | ||| |||| ||        ||   | | |||| |   |    | |  |  ||   
TGTTTGCTGCACAGTCTATCCAATTGGGTGTCAATGATGTAGTTGTGGCTGGTGGCATGGAAAGTATGTCTAATGCGCCTAAATACCTAGTATATGCAAGgttagtatggaaatta-gaatcttggaaatcattcgaagatgacatttaaaaaaaaataaaaaa-aaataataataaaaacgaatcttagcatcaatgaagc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796605|gb|AW782002.1|AW782002
EST:     GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAG                         GAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCCAAGA
genomic: GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgctttt ... tctaaaacagGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
EST: gi|27445805|gb|CA952928.1|CA952928
EST:     GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAG                         GAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
genomic: GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgctttt ... tctaaaacagGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
EST: gi|19347568|gb|BM892448.1|BM892448
EST:     GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAG                         GAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATG
genomic: GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgctttt ... tctaaaacagGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATG
EST: gi|192299493|gb|FG990802.1|FG990802
EST:     GTGGTATGGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAG                         GAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
genomic: GTGGTATGG-AAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgctttt ... tctaaaacagGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
EST: gi|151402278|gb|EV272091.1|EV272091
EST:     GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAG                         GAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
genomic: GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgctttt ... tctaaaacagGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
EST: gi|254317259|gb|GR826204.1|GR826204
EST:     GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAG                         GAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA
genomic: GGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGgttcgctttt ... tctaaaacagGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGA