Sequence
atgc intronic sequence ATGC exonic sequenceGCTCGTTAGAAACATTCCACCAGATCCTGATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAGgttggttccacctgtgtacgctatgctgctaggatgttctgtcattaattatctcatttattttgatattaagaatttaagaagtgttgggtggtttcta...
Basic information
species | Glycine max |
transcript | GLYMA07G39320.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 5
GCTCGTTAGAAACATTCCACCAGATCCTGATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAGgttggttccacctgtgtacgc-tatgctgctaggatgttctgt-cattaattatctcatttattttgatattaagaatttaagaagtgttgggtggtttcta
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CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgt-acttctactaaactgcggataaccatctcagatggttaatactctctgtgttgctatgcttttgctctttataatgcagttgatctttattagatatt-
upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G22120.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTCGTTAGAAACATTCCACCAGATCCTGATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAGgttggttcc--acctgtgtacgctatgctgctaggatgttctgtcattaattat-ctcatttattttgatattaagaatttaagaagtgttgggtggtttcta-
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CCTTGTTAGGAATGTACCTCCGGACGCAGATGAATCTGTAAGTGAACTGGTAGAGCATTTTTTCCTGGTCAATCATCCTGATCACTACCTAACACATCAGgcaagttccttagaagttttaaatttgaaaccgtttagttttctttaaaattatgctcttcttgagatgtaagaacaacataaacattgtgagacgatatgtag
upper sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 4
GCTCGTTAGAAACATTCCACCAGATCCTGATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAGgttggttccacctgtgtacgc-tatgctgctaggatgttctgtcattaattatctcatttattttgatattaa-gaatttaagaagtgttgggtggtttcta-------
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CCTTGTTAGGAATGTGCCCCCAGACGCAGATGAATCTGTTAGTGAGCTTGTGGAGCATTTTTTCCTGGTCAATCATTCAGATAACTATCTTACTCATCAGgttggactgctttaaacttatgcatgattttagaa-gttctaataggaaaaattgga--------gatgctaatgaaagtaagtagcaattgatgatctctagaacccaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193528107|gb|FK484729.1|FK484729EST: GGAGCTACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAG GTTGTTTATAATGCAAACAAACTTGCAAAGTTGGTTAAAAAGAAGAAGAAG
genomic: GGAGC-ACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAGgttggttcca ... attaatgcagGTTGTTTATAATGCAAACAAACTTGCAAAGTTGGTTAAAAAGAAGAAGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCGTTAGAAACATTCCACCAGATCCTGATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAGgttggttccacctgtgtacgctatgctgctaggatgttctgtcattaattatctcatttattttgatattaagaatttaagaagtgttgggtggtttcta
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgg