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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcactgtgccatccaatcaaacaattctcccccctttcaattcagttgatgcattcaaattgttgactctcagatgttttgactccttttcatatccag

Basic information

species Glycine max
transcript GLYMA07G38820.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os03g52460.1 (Oryza sativa), 5'ss of exon 5
GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcactgtgccatccaatcaaacaattctcccccctttcaattcagttgatgcattcaaattg---ttgactctcagatgttttgactccttttcatatccag
||| | | |  ||| || || || |||||  |||||||||| || ||||| |||||||| |||||||| |||||||||||||| ||||    |||| |      ||  | || ||||      |  |  || |  |  |  |||  |||||   |||  | ||  || |   |                  
GATGCCAAAGCTAAAGACATCGATGATGTGCTGATTCTTTCTGGTGATCATCTCTACCGCATGGACTACATGGACTTTGTTCAGgtaattgtctgtac------atacatcatttcttgtagttggctgttaaagtagtatatttgaattgattttgggtatccaatttacag------------------

upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G391936_T03 (Zea mays), 5'ss of exon 5
GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcactgtgccatccaatcaaacaattctcc--cccctttcaattcagttgatgcattcaaattgttgactctcagatgttttgactccttttcatatccag
||| ||| |  ||| || ||||| |||||  |||||||||| || || || |||||||| |||||||| |||||||||||||| ||||   |   |  |  ||  |       || |      | | |  |||   ||   | |||  | |||  |                                  
GATGCAAAATCTAAAGACATTGAAGATGTGCTGATTCTTTCTGGTGACCATCTCTACCGTATGGACTACATGGACTTTGTTCAGgtaaaataaattttc--ccggtaggctgtttatgtagtacatattgatttttttttcg-atttcacttgcag----------------------------------

upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G19220.1 (Arabidopsis thaliana), 5'ss of exon 5
GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcactgtgccatccaatcaaacaattctcccccctttcaattcagttgatgcattcaaattgttgactctcagatgttttgactccttttcatatccag
||| ||||||| ||||| || |||||||| ||||| ||||| || |||||||||||| | ||||| || ||||| ||| | || || || ||   |  | |    |||     |||  |      | | ||    |     | |||     |  |||   |  ||                       
GATGCAAGAAGCAAGGACATAGAGGATGTATTGATCCTTTCTGGAGATCACCTCTACAGGATGGATTACATGGATTTTATACAGgtgagacaaaattacttgagctcatgtccttcatcaagaggt-agttactctccgagactcatgccatgaacttcaatctgcag--------------------

upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 5
GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcactgtgccatccaatcaaacaattctcccccctttcaattcagttgatgcattcaaattgttgactctcagatgttttgactccttttcatatccag
|||| |||||||||||| |||||||||||  ||||||| || || |||||  | ||||||||||||||||||||||||||||| ||||| ||||  ||||| || |   |      |  |   | |  ||||| ||    ||||  | | ||  ||||  | |  ||||  || ||||  || |||||
GATCAAAGAAGTAAGGAAATTGAGGATGTGCTGATTCTGTCTGGAGATCATTTATACCGAATGGACTATATGGACTTTGTTCAGgtaagacact--gccattcactttga------tttctgttcttgattcattt----cattttattagtacactcggaaacattttatctgcttt--atttccag

upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ23417 (Selaginella moellendorffii), 5'ss of exon 6
GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcactgtgccatccaatcaaacaattctcccccctttcaattcagttgatgcattcaaattgttgactctcagatgttttgactccttttcatatccag
|||   ||||  |||||  | ||  | ||  |  |||| ||||| |||||||||||||| |||||||| ||||||||||| || ||| |      |||   |   |              |   |   | ||   || ||   |    ||| |  | | |||                          
GATGTGAGAAACAAGGACGTCGACTACGTGCTTGTTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAGgtatgttttcttgcgcgcagtttgtgtggcgtgtgacttatgtcagtcgtatggtg-gctggcgttgct--cccgcag--------------------------

upper sequence: GLYMA07G38820.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ25399 (Selaginella moellendorffii), 5'ss of exon 5
GATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcac--tgtgccatccaatcaaacaattctcccccctttcaattcagttgatgcattcaaattgttgactctcagatgttttgactccttttcatatccag
|||   ||||  |||||  | ||  | ||  |  |||| ||||| |||||||||||||| |||||||| ||||||||||| || ||| |      | |||   |   |              |   |   | ||   || ||  ||    ||| |  | | |||                          
GATGTGAGAAACAAGGACGTCGACTACGTGCTTGTTCTCTCCGGTGATCACCTCTACCGCATGGACTACATGGACTTTGTCCAGgtatgttttcttatgcgcgcagtttgtgtggcgtgtgacttatgtcagtcgtatggtg-gttggcgttgct--cccgcag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404121|gb|EV273931.1|EV273931
EST:     TTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAA                         AATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGAT
genomic: TTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAgtaaggcact ... tcatatccagAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGAT