1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCTCCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATTTTTTTTCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGgtaaatgttttaatctttaaaatttaaatcagttagtctttatgcatttttcagtaaaatgtgaaagcaaatttccagagttgtcttgttttcgtcatct...
species | Glycine max |
transcript | GLYMA07G38810.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAGACANNNNNNNNCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAG GTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTEST: gi|51336742|gb|CO980608.1|CO980608
genomic: AAAGACATTTTTTTTCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGgtaaatgttt ... atctgtttagGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATT
EST: CACTTGAAACTGTGCGGGTGCTGATTGTTGATGAG GTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTEST: gi|192302028|gb|FG995190.1|FG995190
genomic: CACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGgtaaatgttt ... atctgtttagGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATT
EST: TGAAACTGTGCGGGTGCTGATTGTTGATGAG GTTGACTGCA-TTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATT
genomic: TGAAACTGTGCGGGTGCTGATTGTTGATGAGgtaaatgttt ... atctgtttagGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATTTTTTTTCACTTGAAACTGTGCGGGTGCTGATTGTTGATGAGgtaaatgttttaatctttaaaatttaaatcagttagtctttatgcatttttcagtaaaatgtgaaagcaaatttccagagttgtcttgttttcgtcatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT