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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTCTATGACGAGgtaaccactatttcattgtgagtttctatttctagacagtgtaatctacatttttagcccattgatcagttacaagtttaactatttatgttttacag

Basic information

species Glycine max
transcript GLYMA07G38770.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38770.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g02820.t01 (Vitis vinifera), 5'ss of exon 5
GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTCTATGACGAGgtaacca--ctattt-cattgtgagtttctatttctagacagtgtaatctacatttttagcccattgatcagttacaagtttaactatttatgttttacag------------------------
|||||| | |||   || |||||||||||| | ||||| |||||||||||||||||    ||||| |  |  || | | ||||     |     ||| |   |  | |  | |   | |||  ||| ||  | ||| |    |||   | || || | ||                            
GTTCATAGTGGAAAAGCATTTGATCCAGATGATCCTGAACATATGAAATGGGTCTACTCTGAGgttaataaactgtctacatttgccataatgttttttttcccattttgtttggttattttcccccttttttagt-attgtttttgtttttcatatgttgttctctaatcccattgatattatatag

upper sequence: GLYMA07G38770.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S303_66V6.1 (Physcomitrella patens), 5'ss of exon 5
GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTCTATGACGAGgtaaccactatttcattgtgagtttctatttcta-gacagtgtaatctacatttttagcccattgatcag--ttacaagtttaactatttatgtt-ttacag--
|  |     |||| | | |||||| |||||||||||||||||||||||||| |||||||  ||||    | ||| |  |||    ||   ||| | | ||  ||   | | |  || |       ||||  |   | ||| |     ||  |||| ||  |  |   
GAACGACAAGGAGAGACGTTTGATGCAGATAACCCTGAGCATATGAAATGGATCTATGATCAGgtg-tgattatctttttgc---ttgggattgcaacgatggtcgtaacgatgttatggtgaatttgaataagataacacgcacgccttgttatattgctgtaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193546623|gb|FK500980.1|FK500980
EST:     ATAACCCTGAGCATATGAAATGGGTCTATGACGAG                         GCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTT
genomic: ATAACCCTGAGCATATGAAATGGGTCTATGACGAGgtaaccacta ... tgttttacagGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTT
EST: gi|51335050|gb|CO978916.1|CO978916
EST:     TGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTCTATGACGAG                         GCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTT
genomic: TGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTCTATGACGAGgtaaccacta ... tgttttacagGCTGTCAAGAGGGCTGAGCTTTTTGGCATTCCTGGGGTTACTTATTCTCTT