Sequence
atgc intronic sequence ATGC exonic sequenceGCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgtgttcccttggtttaatgcattatgataatttctgcca...
Basic information
species | Glycine max |
transcript | GLYMA07G35010.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os12g30020.2 (Oryza sativa), 5'ss of exon 6
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgt--gttcccttggtttaatgcattatgataatttctgcca-
|| || || | ||||| || || | ||||||||||||||||| ||||||||||||||||||||||| || |||||||| || ||| | || | || ||| |||| | | || || || || || || | || | | ||| |||| | | || | ||| | |
GCTATCTTTTTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTGATGGTGAGAAGGTTTGGTGGCAGGAGTTTGATGTGACTCCAAGACAGCTGGAAGgttggtgcctagataatgttgtgttc-tatacttctat--ctggtccatatgacggtttacaacaatctcctgagttttaaaccgcatattttttttaacgag
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G115670_T01 (Zea mays), 5'ss of exon 5
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgtgttcccttggtttaatgcattatgataattt--ctgcca--
|| || || | ||||| || || | ||||||||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||| || | || ||| ||| | | | ||| | | || ||| || | | |||| || | | | | || | | | | | ||| | |
GCTATCTTTTTGGCTGCTAAATTTCTCAAAGTGAAGCTTCCATCTGATGGTGATAAGGTTTGGTGGCAGGATTTTGATGTCACACCACGGCAGCTTGAAGgttggt-ccttgtttgcaaagcctgtg-atg--aaacatttccttctgctttattttgtatatatgttctgcatacgacatgctttactgattgaattattatc
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 14
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgtgttcccttggtttaatgcattatgataatttctgcca-
|| || ||||| ||||| ||||| | ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| || || || || || || ||| ||| || || ||| | | ||| || || || || | | ||| | | | | | | || | | |
GCAATCTTCCTGGCTGCGAAGTTTCTTAAAGTCAAGCTTCCATCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGATGTAACTCCGCGGCAGTTGGAAGgttggtctctagatgcaaagtcactagtgtgc-aacttaactgcactactgtaaaaaaacaatgtcgtaagtgctagtttcctactaattagctatctagt
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: AC233979.1_FGT009 (Zea mays), 5'ss of exon 5
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgtgttcccttggtttaatgcattatga--taatt-tctgcca
|| || ||||| ||||| ||||| | ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| || || | || | || ||| ||| || || ||| | | ||| | || || || | | | | || | || | || | || | ||| |
GCAATCTTCCTCGCTGCGAAGTTTCTCAAAGTCAAGCTTCCATCAGATGGCGAGAAGGTCTGGTGGCAAGAGTTTGATGTAACTCCGTGGCAGCTGGAAGgttggtctctagatgcaaagtcactagtgtgc-accttaactgcactactgtaaaa--ttcatttttgtaagtgctagtttcctactaattagctatctagta
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G377311_T01 (Zea mays), 5'ss of exon 6
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgtgttcccttggtttaatgcattatgataatttctgcca
|| || | | ||||| || || | |||||||| || ||||| |||||||| ||| |||||||||| || ||||||||||| ||||| ||| | || ||| ||| | || | | | | | | | | ||| || | | | | | || | | || | |||| | ||
GCTATCTATTTGGCTGCTAAATTTCTCAAAGTGAATCTCCCATCTGATGGTGATAAGATTTGGTGGCAGGATTTTGATGTCACGCCACGACAACTTGAAGgttggtccttatttgcgaagttagtgagaaatgtttccactcgctctactttgtctatttgttctgcatatgttgtgattgttattgattgaattggcac
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G45190.2 (Arabidopsis thaliana), 5'ss of exon 8
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgc--atgctaataaaattgatctgtttggatggccttgtgttcccttggtttaatgcattatgataatttctgcca-----
|| || || ||||| ||||||||| | ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| || | ||| | |||||| || || | |||| | ||| || || | ||| | || || |||| | | || ||| | | | || | ||| |
GCAATATTTCTTGCGGCCAAGTTCCTTAAAGTGAAGTTACCATCAGATGGAGAGAAGGTTTGGTGGCAAGAATTTGATGTCACACCCAGACAACTGGAGGgtatgtacaata---tgaattgacttgacaattcttgtttccttgtttgacttccattccctt-tttctttatgatttcaagagtaatcgtcttttgtatatctcag
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G19600.1 (Arabidopsis thaliana), 5'ss of exon 7
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattg-----atctgtttggatggccttgtgttcccttggtttaatgcattatgataatttctgcca-----------------
|| ||||| |||||||| |||||| | |||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| || || ||| |||||||| | | | || | | | | | || ||| || | | || | | | ||||| | || | ||| | ||| ||| || |
GCAATTTTTCTTGCTGCGAAGTTCCTTAAAGTGAAATTACCATCAGATGGAGAGAAGGTCTGGTGGCAAGAATTTGATGTCACACCTCGACAACTAGAGGgtgagagaactatctttatctttgaattaattttatgaaactgtttccactttttctgtttgacttgtatgcctt--attttgcatctgatgctaagagctactcccttatgtatactgcag
upper sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s0125g00270.t01 (Vitis vinifera), 5'ss of exon 5
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgt----gttcccttggtttaatgcattatgataattt-ctgcca
||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| || || |||||| ||| || || ||| | || | | | | || || | ||| | ||| | || | | | ||| || || ||| |
GCCATTTTCCTTGCTGCCAAGTTTCTCAAAGTGAAGCTTCCATCGGATGGTGAGGTGGTCTGGTGGCAAGAATTTGATGTCACCCCACGCCAGTTGGAGGgttggtttcctcccct----tttttggtgtaaaattggtatggactcaatgggacagtcttcaaacagctctgtggcactgttgctgcatatggatggactgac-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8670063|gb|BE191170.1|BE191170EST: CAAGAATTTGATGTCACCCCACGTCAATTAGAGG AAGTTAGCAATCAAATGTTGGAACTCTACGAGCAGAATAGACTTCCACCAG
genomic: CAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtca ... tctcttgcagAAGTTAGCAATCAAATGTTGGAACTCTACGAGCAGAATAGACTTCCACCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCATTTTCCTTGCTGCCAAGTTCTTGAAAGTGAAGCTTCCATCAGATGGTGAGAAGGTTTGGTGGCAAGAATTTGATGTCACCCCACGTCAATTAGAGGgtcggtgtcatctcctcaattcatttgcatgctaataaaattgatctgtttggatggccttgtgttcccttggtttaatgcattatgataatttctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA