Sequence
atgc intronic sequence ATGC exonic sequenceTTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaatttaacttatttcttagttgctctgattactatgctttgtatcattatattctaacttctgagtagattgattcctctttccttcattttata...
Basic information
species | Glycine max |
transcript | GLYMA07G33620.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 6
TTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaatttaacttatttcttagttgctctgattactatgctttgtatcattatattctaacttctgagtagattgattcctctttccttcattttata
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ACTGTTCAATGAATCTGCACTAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCCAAAACATCACAGGCTTTATGgta--attgtagtgtttgtgttg--tgttctcac-atttggctatataagagtgt-ctcta---tctatcttacttgctccgtttttgctt-atag----
upper sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 6
TTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatg--aatttaacttatttcttagttgctctgattactatgctttgtatcatt---atattctaacttctgagtagattgattcctctttccttcattttata
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ATTATTTAATGAATCTGCTCTAAAAGGGGCCCATTTCATTGAAATATGTACTCAACGCAACATTCCTTTGGTGTTTCTTCAGAACATCACTGGATTTATGgtatgtgatctcaacttctcttcccattactctattgatgaagttgtgcaccattcttgtgccattacattcaagaagaggaatgcattaatgtggaaaa-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18735396|gb|BM528741.1|BM528741EST: CTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATG GTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATG
genomic: CTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaattt ... tctttggtagGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaatttaacttatttcttagttgctctgattactatgctttgtatcattatattctaacttctgagtagattgattcctctttccttcattttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcc