Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTGCTCATTCCAGTGGCTGTGTGTCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaagtttatgatatatatatacacacacacacacttgaaaatgcatgtatctactttctaacattgataaacttgtgtttcag

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 5
AAGTTGCTCATTCCAGTGGCTGTGTGTCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaagtttatga---tatata----tatacacacacacacacttgaaaat-------gcatgt-atctactttcta-aca-ttgataa-acttgtgtttcag-----------------------------
||  ||||||| || || ||||| ||||||||  ||||||||||||| ||||||||||| ||||| |||||||| || |||||||| || || || |||||||| | || | |||     |||| |    |||| | |  ||   |||  |  ||       |||||| || | |||  || ||| || | |  ||||   | || |                             
AAACTGCTCATCCCCGTTGCTGTATGTCATGCTCTAGGCCATGTGACTAGCAATGTCTCCTTTGCAGCAGTTGCCGTCTCTTTCACCCACACAATCAAAGgtgacagaaatctatatgattatacagtgttatagaaaagcattaactccactattgtccaagcatgttattttcttgttatacagtttacactacttaaatctctgtcatctataatgcttttattttgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692862|gb|AW760961.1|AW760961
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|209720817|gb|BW677391.1|BW677391
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCT
EST: gi|120534376|gb|EH262509.1|EH262509
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|23728678|gb|BU762399.1|BU762399
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|7691041|gb|AW759175.1|AW759175
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|207691594|gb|GD675269.1|GD675269
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|13480400|gb|BG509743.1|BG509743
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20448694|gb|BQ252818.1|BQ252818
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCA
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCA
EST: gi|120534368|gb|EH262501.1|EH262501
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|7796788|gb|AW782182.1|AW782182
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20448800|gb|BQ252924.1|BQ252924
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGNTCATACTTGGGCCAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|213587747|gb|DB955609.1|DB955609
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|8669180|gb|BE190287.1|BE190287
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|23063798|gb|BU578627.1|BU578627
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|208296497|gb|GE090115.1|GE090115
EST:     CTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|11412623|gb|BF424634.1|BF424634
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|26269548|gb|CA820611.1|CA820611
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|17519248|gb|BM188290.1|BM188290
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|6481941|gb|AW201212.1|AW201212
EST:     TTCTTTCACTCATACCAATTAAAGC                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
genomic: TTCTTTCACTCATACC-ATTAAAG-gtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
EST: gi|6481941|gb|AW201212.1|AW201212
EST:     TTCTTTCACTCATACCAATTAAAGC                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
genomic: TTCTTTCACTCATACC-ATTAAAG-gtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAA
EST: gi|7796582|gb|AW781979.1|AW781979
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20498205|gb|BQ273135.1|BQ273135
EST:     GTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: GTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|20814778|gb|BQ299256.1|BQ299256
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|17153411|gb|BM143344.1|BM143344
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|15337762|gb|BI498418.1|BI498418
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|193649523|gb|FK597990.1|FK597990
EST:     TCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: TCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|16104872|gb|BI892612.1|BI892612
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|7691923|gb|AW760040.1|AW760040
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|8669191|gb|BE190298.1|BE190298
EST:     CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGTCAAT
EST: gi|213590584|gb|DB973329.1|DB973329
EST:     CAATGTCTCANTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAG                         CTCTTGAACCA
genomic: CAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaag ... tgtgtttcagCTCTTGAACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTTGCTCATTCCAGTGGCTGTGTGTCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACTCATACCATTAAAGgtgataaaagtttatgatatatatatacacacacacacacttgaaaatgcatgtatctactttctaacattgataaacttgtgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT