1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATTGGCCGCCTTTTTTCCCAATAATCCATCATGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatcctcttatatatatatatttattttttttttttttttgggggggggggggggggttgggggaggaacttggttcctattatggcattgttt...
species | Glycine max |
transcript | GLYMA07G31090.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG GATTTAGTGTTGTGCCTTTTTTGGEST: gi|7146910|gb|AW508832.1|AW508832
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATT-AGTGTTGTGCCTTTTTTGG
EST: TCCAATTCATCTTCAAAAATTGCGATATGTTGCATCTACTACATTGTTAG GATTAGTGTTGTGCCTATTTTGGAATGTEST: gi|9259727|gb|BE347874.1|BE347874
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGT
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGNTAG GATTAGTGTTGTGCCTGTTGTGGAGTGTTATAGCTGTTACTGCTGCTTGGAEST: gi|19934355|gb|BQ079383.1|BQ079383
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG GATTAGTGTTGTGCCTTTTTTGGAATGTTEST: gi|42722448|gb|CK768347.1|CK768347
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTT
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGAEST: gi|10255778|gb|BE823488.1|BE823488
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG GATTAGTGTTGTGNNTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGAEST: gi|6964344|gb|AW433037.1|AW433037
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAA GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGAEST: gi|13311994|gb|BG405645.1|BG405645
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGAEST: gi|151409246|gb|EV279054.1|EV279054
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGAEST: gi|254315266|gb|GR830259.1|GR830259
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGGCCGCCTTTTTTCCCAATAATCCATCATGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatcctcttatatatatatatttattttttttttttttttgggggggggggggggggttgggggaggaacttggttcctattatggcattgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggagg