1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttacatttcttgattctgcatttgaagtttttttttttttttggttctttttttttgggggggggggggggggaattttgtttgtgttggccttc...
species | Glycine max |
transcript | GLYMA07G31090.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|151393785|gb|EV263660.1|EV263660
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|298198010|gb|HO039549.1|HO039549
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGEST: gi|13311994|gb|BG405645.1|BG405645
genomic: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAG
EST: CAGGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
genomic: CAGGAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAGgtgatttacatttcttgattctgcatttgaagtttttttttttttttggttctttttttttgggggggggggggggggaattttgtttgtgttggccttc
- - - - - - AAAGAA
- - - - - - AAGAAG
- - - - - - - - AAGAAG
- - - - - - - - AGAAGC
- - - - - - - - - AAGCTG
- - - - - - - - - - AGCTGC
- - - - - - - - - - GCTGCT