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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCCAAGATCATAGGGCGCCTTGGTATTGAGAAGACTATGTTTGAAGCATCAAATCAGAGAATATCCGAGTGGTTCATCAAACAATATGGTCCAAATgtaaatgctctactaaacaacttaaatcttgtcatagtttcccttttcgcttatgttacagcttcattgacattattatttggctttgttcag

Basic information

species Glycine max
transcript GLYMA07G30630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30630.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G21320.1 (Arabidopsis thaliana), 5'ss of exon 4
CATTGCCAAGATCATAGGGCGCCTTGGTATTGAGAAGACTATGTTTGAAGCATCAAATCAGAGAATATCCGAGTGGTTCATCAAACAATATGGTCCAAATgtaaatgctctactaaacaacttaaatcttgtcatagtttcc--cttttcgcttatgttacagcttcattgacattattatttggctttgttcag---------
 ||||| ||  ||||||| ||  | || || |||||||||||||||||||||||  ||  ||   |    ||||||||||||||||  |||||||||||||||  ||||       | |   ||   ||    ||  |||    | ||  | ||   |     |       | |||  ||| |  ||| ||   |         
AATTGCTAAAGTCATAGGACGTTTGGGAATAGAGAAGACTATGTTTGAAGCATCTGATGCGAAGTTGGTTGAGTGGTTCATCAAACGTTATGGTCCAAATgtatttgct------gatactctagtcctctctattatttttaaccttctgtttgaatggtcaccctcacaagattcatatct--cttcgtcttggtttttcag

upper sequence: GLYMA07G30630.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv00s1274g00010.t01 (Vitis vinifera), 5'ss of exon 3
CATTGCCAAGATCATAGGGCGCCTTGGTATTGAGAAGACTATGTTTGAAGCATCAAATCAGAGAATATCCGAGTGGTTCATCAAACAATATGGTCCAAATgta-aatgctctactaaacaacttaaa-tcttgtcatagt-ttcccttttcgcttatgtt-acagcttcattgacattattatttggctttgttcag
|||||| ||| |||| ||||| || ||| |||||||||| |||||||||||||||| |      |  || |||||||| ||||| || |||||||| || ||| || || || ||      | |    ||     |  |  ||   ||||    |||||| | ||| || |   || |    | |   |||      
CATTGCAAAGGTCATTGGGCGTCTAGGTCTTGAGAAGACCATGTTTGAAGCATCAAGTGCCCAGACCTCTGAGTGGTTTATCAAGCACTATGGTCCCAAGgtataacgcacttctgcttctcctgttctcccactactgcattaaatttttttgtatgttcatagcatcttaaccaatgacctataaatttag----