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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttgcttacacttttcaatttggactcatattggtgaacataacaaattttggtggttatag

Basic information

species Glycine max
transcript GLYMA07G17680.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 5
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttg-cttacacttttcaa--tttggactcatattggtgaacata-acaaattttggtggttatag
 || || || |||||||| || |||||||||||||| || ||||||||||| ||||||| |    |   | || | ||  |   |  |  |||  | | ||| | |  |||  |  ||  | |   |    | ||
TTATATACCGAGATATACATTCAGCTGGCTGGTGAAGCCTATGTGGTTGATTATAAgtaagcttccagccatgtcctatgcggatacacctttacattaatactagccaactgatgcatttctcactccccaaag

upper sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g04920.1 (Oryza sativa), 5'ss of exon 6
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatg---tacactt---tcttgcttacacttt--tcaat--ttggactcatat-tggtgaacataacaaattttggtggtta-tag
 ||||||||||||||||| ||||||||||| ||  | || ||||||    ||||||||| |   || |||    | |   ||| |||||  | ||   |  || |  ||| || |||| | |   | |      ||  |  ||
ATACATTCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAAgtaagcattatactcccatttcatttatactttcataaacagtcagatttttatgtgatgaaaacattgattcgatccggcaaacag

upper sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 6
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacactttcttgcttacacttttcaatttggactcatattggtgaacataacaaattttggtggttatag-------------------------
 || || |||||||| |||||||| ||| |||||||||||||||||||||||||||||||| | | |||||| ||    | | | |||||  ||    |    | ||  |  || ||    | | | |||                          
ATATATCCCAAGATACACCTTTAGTTGGTTGGTGAAACCCATGTGGTTGATCATAAgtatgcaaattttctttctgg--cctcttaatttaaacatggaagcttaaaattttcagataggtgagctaataattgttagtttggttttccttgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590070|gb|AW705831.1|AW705831
EST:     TCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAA                         AATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTG
genomic: TCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatgtacac ... gtggttatagAATTTCTTCACAGAGCAGCTGATCTGACTCTGGTGCCATCTGCTGCCATTG