1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTGGATGCCAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaagctttattttccatattttgtttggttgctttatgatgtttcctccagctcacctttcattgatgcag
species | Glycine max |
transcript | GLYMA07G14540.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|208303944|gb|GE105677.1|GE105677
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|298173661|gb|HO016997.1|HO016997
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|254327987|gb|GR834952.1|GR834952
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|33388612|gb|CA851819.1|CA851819
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|193645503|gb|FK590443.1|FK590443
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|254341868|gb|GR853005.1|GR853005
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GGTGAGGTCATTAACGAGAGAAGATAAATGTCCTCAGTGCAAAGGAAACAAEST: gi|7925973|gb|AW831999.1|AW831999
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagG-TGAGGTCATTAACGAGAGA-GATAAATGTCCTCAGTGCAAAGGAAACAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|192328757|gb|FK022543.1|FK022543
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|120491272|gb|EH219439.1|EH219439
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|13479325|gb|BG508668.1|BG508668
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|5770887|gb|AI974061.1|AI974061
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: TGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|298195828|gb|HO044219.1|HO044219
genomic: TGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: GCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|254327121|gb|GR836730.1|GR836730
genomic: GCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|11687347|gb|BF594987.1|BF594987
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: ATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|207678496|gb|GD661034.1|GD661034
genomic: ATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: TGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|209702366|gb|BW656341.1|BW656341
genomic: TGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|18040211|gb|BM308505.1|BM308505
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|298179173|gb|HO027644.1|HO027644
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|298195498|gb|HO043889.1|HO043889
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|298186346|gb|HO036979.1|HO036979
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|193657744|gb|FK601127.1|FK601127
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GCGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|208324992|gb|GE124876.1|GE124876
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|298172387|gb|HO019427.1|HO019427
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|192322850|gb|FK014781.1|FK014781
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|163923429|gb|EH038356.1|EH038356
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTEST: gi|18732460|gb|BM527057.1|BM527057
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGT
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|26058372|gb|CA801286.1|CA801286
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAAEST: gi|208159029|gb|GD951754.1|GD951754
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
EST: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTG GTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
genomic: AGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaag ... attgatgcagGTGAGGTCATTAACGAGAGAGATAAATGTCCTCAGTGCAAAGGAAACAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGATGCCAAGGCACTGGTATGAAAATTACAAGAAGGCAGATTGGACTAGGCATGATTCAACAAATGCAACATGTCTGTCCTGACTGCAGAGGATCTGgtaatggaagctttattttccatattttgtttggttgctttatgatgtttcctccagctcacctttcattgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT