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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagtttaattaccatgaaggaggtgaactagaaatgggcaaaagacaagaataatctaaaaaattgtcaatattcaatttcgttgatacactaaca...

Basic information

species Glycine max
transcript GLYMA07G12980.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457646|gb|CD399674.1|CD399674
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31462596|gb|CD404624.1|CD404624
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31306116|gb|CD391319.1|CD391319
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|298171825|gb|HO021417.1|HO021417
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31457042|gb|CD399070.1|CD399070
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTTACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31457464|gb|CD399492.1|CD399492
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGG-AACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|7796078|gb|AW781475.1|AW781475
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|208087792|gb|GD888596.1|GD888596
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|192331548|gb|FK023424.1|FK023424
EST:     ATCCTAACTGTCGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|22927863|gb|BU545002.1|BU545002
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|7686605|gb|AW757253.1|AW757253
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31467620|gb|CD409648.1|CD409648
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|15662434|gb|BI699805.1|BI699805
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31474830|gb|CD416858.1|CD416858
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|208280548|gb|GE080928.1|GE080928
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|57575286|gb|CX548261.1|CX548261
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31465644|gb|CD407672.1|CD407672
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|298183238|gb|HO028223.1|HO028223
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|12691356|gb|BG157692.1|BG157692
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|151401940|gb|EV271753.1|EV271753
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31463797|gb|CD405825.1|CD405825
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAATCTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAA-CTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|192331547|gb|FK023423.1|FK023423
EST:     ATCCTAACTGTCGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31469331|gb|CD411359.1|CD411359
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|20448813|gb|BQ252937.1|BQ252937
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|26059701|gb|CA802615.1|CA802615
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|20811574|gb|BQ296052.1|BQ296052
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|192321257|gb|FK014347.1|FK014347
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|10848296|gb|BF070817.1|BF070817
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|13788822|gb|BG651413.1|BG651413
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|27445924|gb|CA953047.1|CA953047
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|192314355|gb|FK008381.1|FK008381
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|7692141|gb|AW760255.1|AW760255
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31471469|gb|CD413497.1|CD413497
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31460814|gb|CD402842.1|CD402842
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|192298638|gb|FG990949.1|FG990949
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|209700427|gb|BW664427.1|BW664427
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31469168|gb|CD411196.1|CD411196
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|10844859|gb|BF068055.1|BF068055
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|13789520|gb|BG652111.1|BG652111
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAAAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|7639234|gb|AW733561.1|AW733561
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31475239|gb|CD417267.1|CD417267
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACCAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31456084|gb|CD398112.1|CD398112
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|31467937|gb|CD409965.1|CD409965
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|8827741|gb|BE211471.1|BE211471
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|19271181|gb|BM887437.1|BM887437
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GGACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|12690107|gb|BG156443.1|BG156443
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG
EST: gi|7284797|gb|AW597222.1|AW597222
EST:     ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG                         GTACTATTCACTGACATGAATGCTTATGAG
genomic: ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagttt ... tctttcgcagGTACTATTCACTGACATGAATGCTTATGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGgtacaagtttaattaccatgaaggaggtgaactagaaatgggcaaaagacaagaataatctaaaaaattgtcaatattcaatttcgttgatacactaaca

- - - - - - - - - -  GCTGGA
- - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaaga