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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatag

Basic information

species Glycine max
transcript GLYMA07G10000.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 6
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatag------
|||||| ||||| || || || ||||| |||||||| |||||||| |   | ||||||| |||| | ||||| |||||||||||||| || ||||| |||||  |    | |  |||  ||||    ||| |||   | |    ||| || | || ||||  |  || |  |  ||  ||||| |||  |       
TGAGGCGGAAGTGCGGATAGCGGCTGCAGGGAAAGTTACTAAGTTCTGTAGGATTTTAAGTCCTCAGCTTGCAATTCAGCATATTCTTCCTTGTGTCAAGgtgggccaacgct-taaccaaat----attattaactggt----tttctgctgct-gtttattcccagcaaactaa-cttgccaactgcatctgcag

upper sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatag
|||||||||||| || || || |||||||| |||||||||||||||| |||||| ||||||||| | ||  |  | || |||||||| ||||| || |||||  |  | || || ||  |  |    |   || |  |||   |||| |  | ||   |  ||||   |    |||||    ||||     
TGAGGCTGAAGTGCGGATAGCAGCTGCTGGAAAAGTAACTAAGTTTTGCCGCATATTAAATCCTCAGCTCTCAGTCCAACATATTCTTCCATGCGTTAAGgtggg--ggcaaagcaattat-tgaacaccatttc--gttgctatttttctt-ctgagtgaattaactcatgccaagtgcatctacag---

upper sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatag
|||||||||||| || || || |||||||| |||||||||||||| | |||||| ||||||||  | ||| | || || |||||||| || || || |||||  ||     ||    ||  ||| |  ||||| |   ||    | |  |  | |    |  ||    || ||    |||           
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtg----caaagcaattattcgttttgttgctattttttttctgagtgaattaactagttcatgctaattgcatttatag-------

upper sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 7
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtcacagtaaaaaaattgggatt-gttacaggttaacatttatgat------actagtttgattacaactgatcaa-gtttgcctactatag------------------------------------------
||||||||||||||| || || ||||| || |||||||| || |||| ||| ||||| || || || ||||| |||||||||||||| || |||||||||||||  |  |   | ||||   ||  | ||  |||     | |  ||| | ||      ||  | | |  | | | | | ||  | ||  ||   ||                                            
TGAGGCTGAAGTACGCATAGCAGCTGCAGGAAAAGTAACAAAATTTTGCCGGATTTTGAACCCAGAACTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatgc-ttgcaaaagttttaagtttcattatgctatgaagtttcttatgggcttacatggtggggttctatttaccactgcttatctgtcatctgtcttaaaatttgtgactagattagaaaatgtccttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258560|gb|BG881468.1|BG881468
EST:     GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|8285673|gb|BE023232.1|BE023232
EST:     GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCCGTT
genomic: GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|192310534|gb|FG999543.1|FG999543
EST:     GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: GCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|207846884|gb|GD819103.1|GD819103
EST:     CCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
genomic: CCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCACTGGCTTCTGTT
EST: gi|193364266|gb|FK332228.1|FK332228
EST:     ATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAG                         GAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCAACTAGGCTTCTG
genomic: ATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtc ... cctactatagGAGTTATCAACAGATTCATCTCAACATGTTCGCTCTGCA-CT-GGCTTCTG