Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTGGATGTCTACTAAGTGGTTGGATTGCTGATGGGGTGGGGCGTCGTAGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgttatacttccagtaccaatataatattgttgagtcattttgtttttctcatggaatagatggaaactatccttgcactttattcaaccacttcgtaggt...

Basic information

species Glycine max
transcript GLYMA07G09270.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09270.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 5
TGATTGGATGTCTACTAAGTGGTTGGATTGCTGATGGGGTGGGGCGTCGTAGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgt-tatacttcca-gtaccaatataatattgttgagtcattttgtttttctcatggaatagatggaaactatccttgcactttattcaa--ccacttcgtaggt
| || || | |||| | |||||||||||||| |||||| | |||||||| |||||||| ||||| ||||||||||| ||||| |||||||||||| |||||| ||||  ||   |||| |  |  | | || |  ||| |   ||  |||  ||   ||  |    |||| |  ||||   | | | |   | |    | |  |
TTATCGGTTCTCTATTTAGTGGTTGGATTGCAGATGGGATAGGGCGTCGAAGGGCTTTTCAATTATGTGCTCTGCCTATGATTATTGGTGCTTCTGTGAGgtatatatatctttgtacaataaagaaaatgctt-gtcctaaagtaattcctat---atcaagcacaactttatttgcttgtaactgagagctaaccagaactt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452778|gb|BM954188.1|BM954188
EST:     AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAG                         TGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
genomic: AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgttatacttc ... gcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
EST: gi|26058787|gb|CA801701.1|CA801701
EST:     AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAG                         TGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
genomic: AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgttatacttc ... gcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
EST: gi|192294070|gb|FG986159.1|FG986159
EST:     AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAG                         TGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG
genomic: AGGGCTTTCCAATTGTGTGCTCTGCCAATGATAATTGGTGCTTCTATGAGgttatacttc ... gcattttcagTGCGGCAACAAACAACTTGTTTGGCATGCTTGTAGGAAGGTTGTTTGTTGG