Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATGGGGTGATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagagttttgctcaagacatttgacatttatgcttattataagcatctaagaatatataagctttggagtgcagtgtgctattataggcatttat...

Basic information

species Glycine max
transcript GLYMA07G09160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01680.t01 (Vitis vinifera), 5'ss of exon 5
TATATGGGGTGATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttag----tagagttt--tgctcaagacatttgac--atttatgcttattataagcatctaagaatatataagctttg---gagtgcagtgtgctattataggcatttat---------------------------------------------------------------------------------
  ||||||| |||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||||    || | |    |  |  |  |||   ||  |  |   |    ||||||  |       | |  ||  |||      |   | |||   |    |   |  | |                                                                                 
CGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgttagattttacattccagtatttcatgcatcaaactcaccttcaccccatataagtttactcttctgttcaacatttctccatggaaaatgtatcaaggaaaagacctttttcaagtttagcaactcctatcatttgttactaagttcatgctcatgaagaaagctaaaatcagtttctgttggttaacag

upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01670.t01 (Vitis vinifera), 5'ss of exon 5
TATATGGGGTGATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagagttttgctcaagacatttgacattt-atgcttattataagcatctaagaatatataagctttggagtgcagtgtgctattataggcatt-tat-----
  ||||||| |||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||   ||| |||   |      |||| |   || |  || |   | | |   ||  | | ||    || |   || ||          || |  | | |||     
CGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgtt---agattttacattccattatttcatgcttcaaactcaccttcaccccatataagttta----ctcttctgttcaacacttctccatggaaaatgtatcaagg

upper sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01690.t01 (Vitis vinifera), 5'ss of exon 5
TATATGGGGTGATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagagttttgctcaagacatttgacatttatgcttattataagcatctaagaatatataagctt----tggagtgcagtgtgctattataggcatt-tat-
| ||||||| |||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||   ||| |||   |      ||||  |||  ||||||   |    | |  | |   ||||||| ||    |   || ||   |      || |  | | ||| 
TGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgtt---agattttacattccattattt--catgcatgcttcaaactcaccttcacgg-catataagtttactcttctgttcaacatttctccatggaaaatgtatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602705|gb|DB978120.1|DB978120
EST:     AGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAG                         GCTGGTCCTCGGATTTGCCTAGGAAAGGAGTTTGCTTATAGACAGATGAAG
genomic: AGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagag ... ttatctgcagGCTGGTCCTCGGATTTGCCTAGGAAAGGAGTTTGCTTATAGACAGATGAAG
EST: gi|213602867|gb|DB978170.1|DB978170
EST:     AGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAG                         GCTGGTCCTCGGATTTGCCTAGGAAAGGAGTTTGCTTATAGACAGATGAAG
genomic: AGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagag ... ttatctgcagGCTGGTCCTCGGATTTGCCTAGGAAAGGAGTTTGCTTATAGACAGATGAAG
EST: gi|214008126|gb|DB988499.1|DB988499
EST:     AGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAG                         GCTGGTCCTCGGATTTGCCTAGGAAAGGAGTTTGCTTATAGACAGATGAAG
genomic: AGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagag ... ttatctgcagGCTGGTCCTCGGATTTGCCTAGGAAAGGAGTTTGCTTATAGACAGATGAAG