Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTGGGGTAATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagttttgcacttttgcataggacattagacatttatgtttactgaagagtgtgtttggatgaaagaatttaaaattctgagaaattttaaattt...

Basic information

species Glycine max
transcript GLYMA07G09150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01680.t01 (Vitis vinifera), 5'ss of exon 5
TATTTGGGGTAATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagttttgcacttttgcatagga--cattagac-------------atttatgtttact-----gaagagtgtgtttggatgaaagaatttaaaattctgagaaatttt--aaattt------------------------------------------------------------------------
  | |||||  ||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||||   |||| || |   | ||   |  ||| | ||             || || |||||||     |   |   | | |  ||| || |  |   ||     |||  ||||  || |||                                                                        
CGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgttag--attttacattccagtatttcatgcatcaaactcaccttcaccccatataagtttactcttctgttcaacatttctccatggaaaatgtatcaaggaaaagacctttttcaagtttagcaactcctatcatttgttactaagttcatgctcatgaagaaagctaaaatcagtttctgttggttaacag

upper sequence: GLYMA07G09150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01670.t01 (Vitis vinifera), 5'ss of exon 5
TATTTGGGGTAATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagttttgcacttttgcataggacattagacatttatgtttactgaa---gagtgtgtttggatgaaaga-atttaaaattctgagaaattttaaattt
  | |||||  ||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||||   |||| || |     ||   |   |  | | | |  || ||   |    ||| |  |    ||    | | ||     |   | |  | | ||    
CGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgttag--attttacattccattatttcatgcttcaaactcaccttcaccccatataagtttactcttctgttcaacacttctccatggaaaatgtatcaagg--

upper sequence: GLYMA07G09150.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g01690.t01 (Vitis vinifera), 5'ss of exon 5
TATTTGGGGTAATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagtt---ttgcacttttgcataggacattagacatttatgtttactgaagagtgtgtttggatgaaagaatttaaaattctgagaaattttaaattt-
| | |||||  ||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||||   ||   || || | || ||| | |   |  | | | |  || || | | | |  ||||  |        || || |||     |      |  | | 
TGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgttagattttacattccattatttcat-gcatgcttcaaactcaccttcacggcata-taagttt--actcttctgttcaacatttctccatggaaaatgtatc