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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGGTTTAAGACCCAATGGGTTTGTGTCTGAGGCCTCTAGGGAAAATGGAATGGTCATCATTAACAGCTTGGCACTTGTTGAGACTCTTATGGACTCGgtaaacaattgaacttacaattaagcgtcttcgttctctaatttaggttatcaagtgaaactctaattctaattaaagaatagtacgagaagcatgtaaa...

Basic information

species Glycine max
transcript GLYMA07G08340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g02000.t01 (Vitis vinifera), 5'ss of exon 4
CATTGGTTTAAGACCCAATGGGTTTGTGTCTGAGGCCTCTAGGGAAAATGGAATGGTCATCATTAACAGCTTGGCACTTGTTGAGACTCTTATGGACTCGgtaaacaattgaacttacaattaagcgtcttcgttctctaatttaggttatcaagtgaaactctaattctaattaaagaatagtacgagaagcatg--taaa
||||||  | |  |||| ||| |||||  | ||| |  | ||||| | ||| ||||| ||||| ||||||||||| |||||||||||  | ||||||||||| |  |||| ||  |     |     |||   | | |   | |   |   |        ||||   |||    |    | | |||   |||  |   || |
CATTGGCATGAAGCCCAGTGGCTTTGTCACCGAGTCTACAAGGGAGACTGGTATGGTAATCATCAACAGCTTGGCTCTTGTTGAGACATTAATGGACTCGgtgagtaattcaagatct--ctctctctctctctccccatctctccctctccctccctctctctttctctcggaagtatacactacagtaagtttcactaga