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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTCAATGCATATAGAGTTCTTTTTGATGAGgtaagtttttgtgtatcccctttttatacatgtcccaataattagattaataaaaaatgtgttagaattttgcag

Basic information

species Glycine max
transcript GLYMA07G07850.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 5
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTCAATGCATATAGAGTTCTTTTTGATGAGgtaagtttttgtgtatcccctttttatacatgtcccaataattagattaataaaaaatgtgttagaattttgcag-----
||||||||||||  |||| ||  | ||| ||||||| ||||| ||||| ||||||||||| || ||||| || ||||| || |||||||| |||||||| || ||| |   | ||     ||||| ||       ||    |  | ||  ||| |  | | |     ||     |     
AAGAGTTGTTCTCTATCTGGCTGAGGCTTTAGAATATTGCACCAGCAAGGGGCGTGCTCTGTACCATGATCTTAATGCCTACAGAGTTCTCTTTGATGATgtgagtatc-atatagattgtttttgtaacgtgatcatctgtgtgttttgtaacatttctatgttgtttacatggcacag

upper sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 5
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTCAATGCATATAGAGTTCTTTTTGATGAGgtaagt-ttttgtgtatcccctttttatacatgtcc--caataattagattaata-aaaaatg-tgttagaattttgcag
||| ||||||||   ||| ||  | ||| ||||||| ||||| | ||  || ||||||||||| ||||| |||||||| ||||||| ||| |||||||| || ||| |  |||| ||    |||||  |||||  |  || |   |    ||| | |   ||| |||    ||  | |||
AAGGGTTGTTCTCTGTCTCGCTGAGGCTTTAGAATATTGCACTAACAGGGGCCGTGCTCTCTACCATGATCTCAATGCCTATAGAGCTCTGTTTGATGATgtgagtatcgtgtg-atttgttttttcaacatgatcagcagtgggttctgtaacacagttatgctgtctatatactacag

upper sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 5
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 5
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTCAATGCATATAGAGTTCTTTTTGATGAGgtaagtttt-----tgtgtatcccctttttatacatgtcccaa----taattagattaataaaaaatgtgttagaattttgcag---------------------
| |||||||| || |||| ||||||||||| ||||||||||| |||||||| ||| |||| || || ||||||||||| ||  | ||| | ||||||||||||  | ||     | | ||  |  |||||   | |    | |    |   ||  ||  ||    ||   ||     | ||  |                     
ACGAGTTGTTTTATATCTAGCACAAGCTCTTGAATACTGCACCAGCAAAGGCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttattagttatatataagcagtttttcctctttcttcgaaacctgtctatgtttctatgctattccttcattctctgacgccttaaggggcttttaataag

upper sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 5
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTCAATGCATATAGAGTTCTTTTTGATGAGgtaagtttttgtgtatcccctt----tttatacatgtcccaataattagatta-ataaaaa-----------atgtgttagaattttgcag
||| || |||||||||||||| |||||| ||||||| || ||| ||| ||||||||| || || |||||||| ||||| |||||| || | || |||||||||| | ||| |  || |||||    ||   |    |     |  |||||||  |||   |           ||||  |||||||||||||
AAGGGTGGTTCTACATCTTGCCCAAGCTTTAGAATATTGTACAGGCAGAGGGCGTGCCCTTTACCATGACCTTAATGCTTATAGAATTTTGTTCGATGAGgtaaatattttttcattcccttaaatttggaatcctttttgcttgttagattctatatgcattcctctatttatgtactagaattttgcag