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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtttgtatttgattatatgctaattgttgttttgataaaaaaaaaaaaaaatctatcatctggttagcagagaagtctgccttttgttaatgtcatgtatttgatttctatatccatatgctccctccag

Basic information

species Glycine max
transcript GLYMA07G07300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g45110.1 (Oryza sativa), 5'ss of exon 4
CTGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtttgtatttgattatatgctaattgttgttttgataaaaaaaaaaaaaaatctatcatctggttagcagagaagtctgccttttgttaatgtcatgtatttgatttctatatccatatgctccctccag
|||||||||||||| | |  ||||||||||||||||| |||||||||||  | |||||  ||||||||||||| ||||||||||||||||| ||||| |||||    ||||  |    | |||||   | | ||||| || |  |               || || | |||||    | || |  |     | |||   |  |  ||   ||    ||  ||               
CTGATGATGAAATGAGGACCCTTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACTGGTCGTGCAATGGAACTTGGTCGGGAGTGgtaa---gtttccag--aactatatttgattagttgtcttcagcag--------------taccaacaggttaattaataattgcgtagcattttagcattgttcat---atcctaatgccc---------------

upper sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G116563_T01 (Zea mays), 5'ss of exon 4
CTGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtttgtatttgattatatgctaattgttgttttgataaaaaaaaaaaaaaatctatcatctggttagcagagaagtctgccttttgttaatgtcatgtatttgatttctatatccatatgctccctccag
|||||||||||||| | |  |||||||| ||  || |||||||||||||| | |||||| ||||||||||||| ||||| ||||| |||||||| ||||||||   | | ||| ||  |   | |  |  || |||| || |    || ||  || ||| | |  |||      ||   |  |||  |  | |    ||    || ||                             
CTGATGATGAAATGAGGACGCTTAATGTTCCAACTCTGCAAACTGATGGTTTGATTTTTTTATGGGTCACTGGTCGTGCCATGGAGCTTGGGCGAGAATGgtaagttttctgttttaaaacct-taattttttttgtctttactgtaacaactaacaatatgttttctc-----caacaagatct--caatggccgttgaagggtttt-----------------------------

upper sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 5
lower sequence: AT4G10760.1 (Arabidopsis thaliana), 5'ss of exon 4
CTGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtttgtatttgattatatgcta-attgttgttttgataaaaaaaaaaaaaaatctatcatctggttagcagagaagtctgccttttgttaatgtcatgtatttgatttctatatccatatgctccctccag
||||||| |||||||| | ||||||||| ||  | || || ||||| ||| | ||||| || ||||||||||| ||||| |||||||| || || |||||||| | |      || | |  | ||  |   ||  |||  |  |  |    ||   |  | | |  | |  ||                                                                 
CTGATGACGAAATGCGAACTCTTAATGTTCCCTCGTTACAGACTGACGGTTTGATTTTCCTCTGGGTCACTGGTCGTGCTATGGAACTAGGCCGTGAATGgtact-tagaaaaatctcaacaaattttgtgttcatgtgcttttccactctaatggagttttttttttttttttaag-------------------------------------------------------------

upper sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g02400.t01 (Vitis vinifera), 5'ss of exon 4
CTGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtttgtatttgattatatgctaattgttgttttgataaaaaaaaaaaaaaatctatcatctggttagcagagaagtctgccttttgttaatgtcatgtatttgatttctatatccatatgctccctccag
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| || ||||| ||||| || |||||||||  ||  | | |||  ||||||   |||  |                 |||| ||||| |  ||||| | |  |   |   |  |||     || ||   | ||  | | |  |  | ||              
CTGATGATGAAATGCGCAGTCTTAATGTTCCTGCATTGCAGACTGATGGTCTGATTTTTCTTTGGGTCACTGGACGCGCTATGGAGCTTGGACGAGAATGgtat-atggctatctttatttatattgcaatcat-----------------aaaacaatcttt--tctggatgg--gtttaacatttcttacaaaaaagtttagaat--gttctgcaagttcaa-------------

upper sequence: GLYMA07G07300.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S249_97V6.1 (Physcomitrella patens), 5'ss of exon 5
CTGATGATGAAATGCGCAGTCTTAATGTCCCTGCTTTGCAAACTGATGGTCTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtttgtatttgattatatgctaattgttgttttgataaaaaaaaaaaaaaatctatcatctggttagcagagaagtctgccttttgttaatgtcatgtatttgatttctatatccatatgctccctccag
|||||||||| ||||| | ||| ||||| || ||  ||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| ||  | |||||||| | | | | |||||    |      || |  | ||  |||    |    |  |   |   | | ||  ||      || ||    || | | |   | ||  || ||                           
CTGATGATGAGATGCGTAATCTGAATGTACCAGCACTGCAAACAGATGGACTTATATTTCTTTGGGTCACTGGTCGTGCTATGGAACTCGGAAGAGAATGgtaat-tttctatattttccca------aactactcttccgatggttaggccagtattcccgacgtatg--tattgattaaatc----ttatttcagaattataaatgtgcac------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6665975|gb|AW277434.1|AW277434
EST:     CTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATG                         CTTGGACCTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
genomic: CTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtt ... ctccctccagCTTGGACCTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
EST: gi|22525877|gb|BU084688.1|BU084688
EST:     CTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATG                         CTTGGACCTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC
genomic: CTTATTTTTCTATGGGTCACTGGACGTGCAATGGAACTTGGGCGGGAATGgtattgtgtt ... ctccctccagCTTGGACCTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTCAAAAC