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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCGCCAGTGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcattttcctatctttattgccaattataattaatttcagtacttgtaagagcaaaatgtgttattagttattattattctcaaatttatggtactcactcattggttttctccctttctctttctgcag

Basic information

species Glycine max
transcript GLYMA07G07250.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 4
TTGATCGCCAGTGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcattttcctatctttattgccaattataattaatttcagtacttgtaagagcaaaatgtgttattagttattattattctcaaatttatggtactcactcattggttttctccctttctctttctgcag
|||||||||| |||||  | |||||||| |||||||| ||||||||||| |||    | ||    |||||||| |||||||| |||||||| || || |||| |  |   || ||||   ||||  |   ||| |  ||| |  |  ||       ||||  ||   |  |  ||      ||||||  | ||   ||  |   ||| |||   | | |  ||                          
TTGATCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAGCAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGgtaa--actattaaact---cattaac---tctctcctgcaatctgcaag-----gcagtctttaggaatgtgaa------tattaggaaataacttttac---tttgtgg-gttgatttgtttag-----------------------

upper sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g02030.t01 (Vitis vinifera), 5'ss of exon 4
TTGATCGCCAGTGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatggtttaactaagcatttt-cctatctttattgccaattataattaatttcagtacttgtaagagcaaaatgtgttattagttattattattctcaaatttatggtactcactcattggttttctccctttctctttctgcag
|||||||||| |||||| | ||||| |||||||||||||| || ||||| || |   | ||    |||||||| || ||||| |||||||| ||||| ||||||||    ||    |  | | |    | | ||| |     |||   |  |        |   ||  |   |  ||||  ||   ||                                                              
TTGATCGCCAATGGAACTCTAAGGTGTCTGATTTTGGGCTGGCAAAGCTCTTATGTTCTGAGATAAGTTATGTAACGACTCGTGTGATGGGAACATTCGGgttagtccatttccttttggtaatgaatcgaccttcacataaaatggcatattgagaagatttctgatatttcccaatggctttccag--------------------------------------------------------------

upper sequence: GLYMA07G07250.1 (Glycine max), 5'ss of exon 5
lower sequence: PP1S568_2V6.1 (Physcomitrella patens), 5'ss of exon 5
TTGATCGCCAGTGGAACCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagt--atggtttaactaagcattttcctatctttattgccaattataattaatttcagtacttgtaagagcaaaatgtgttattagttattattattctcaaa--tttatggtactcactcattggttttct----ccctttctctttctgcag-------------
| |||   ||||||||| ||||||| ||||||||||| ||||| |||||| |     | |   ||||  |||||||||| || || ||||| || || |||| ||   | ||     ||  | ||| |  | |    ||||   |  |  | || || ||||     ||  | |   || |  | |   ||  |  || || || |  ||||||   |    |  |     ||||    ||| | | | ||||   |             
TGGATGCACAGTGGAACGCAAAGGTGTCTGATTTTGGACTTGCCAAGCTTCTTGGCTCTGGCGATAGCCATGTCACTACGCGTGTCATGGGTACTTTCGGgtaagctcaaggccctcctctggattgtattgt----attgttga--aacagtagttgcagt-----tataaacggcatttaatgtcgatttcttctagtcacatagttttatgtcgcgtgtttctcaacgttctagtccccatccccattctttggctgtatcactcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348962|gb|BI974557.1|BI974557
EST:     TTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGG                         TTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
genomic: TTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatgg ... ctttctgcagTTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
EST: gi|208318787|gb|GE112402.1|GE112402
EST:     TTGTCAGCGGATCATAGTTATGCCACTACTCGAGTGATGGGGACATTTGG                         TTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
genomic: TTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatgg ... ctttctgcagTTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
EST: gi|151404308|gb|EV274118.1|EV274118
EST:     GGATCATAGTTATGATCCCCACTCGAGTGATGGGGACATTTGG                         TTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
genomic: GGATCATAGTTATG-TCACTACTCGAGTGATGGGGACATTTGGgttagtatgg ... ctttctgcagTTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
EST: gi|11413881|gb|BF425892.1|BF425892
EST:     TTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGG                         TTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
genomic: TTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatgg ... ctttctgcagTTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
EST: gi|11413988|gb|BF426063.1|BF426063
EST:     TGTCAGCCGAAT-ATAG-TATGTCACTACTCGAGTGATGGGGACATTTGG                         TTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
genomic: TGTCAG-CGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatgg ... ctttctgcagTTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
EST: gi|51335712|gb|CO979578.1|CO979578
EST:     TTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGG                         TTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA
genomic: TTGTCAGCGGATCATAGTTATGTCACTACTCGAGTGATGGGGACATTTGGgttagtatgg ... ctttctgcagTTATGTTGCACCAGAGTATGCATGCACTGGAATGCTGACTGAAAAGAGTGA