Sequence
atgc intronic sequence ATGC exonic sequenceTGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTCAAATTCCTACAATTGGAATTGGGGCTGGACCCTTTTGCAGTGGACAAgttagttggcctaattaccattttggaaaatgttctgttcttgacatgtactttttgtaagagatgaatgcagcctacattagtgacagtaattttgttt...
Basic information
species | Glycine max |
transcript | GLYMA07G06950.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G06950.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g02170.t01 (Vitis vinifera), 5'ss of exon 3
TGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTCAAATTCCTACAATTGGAATTGGGGCTGGACCCTTTTGCAGTGGACAAgttagttggcctaa---ttaccattttggaaaatgttc-tgttcttgacatgtactttttgtaagagatgaatgcagcctacattagtgacagtaattttgttt
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TGTTCTTGAATGTGTGCCTGCACCTGTGGCTGCTGCAACAACATCAGCCCTTCGAATCCCCACCATTGGCATAGGAGCTGGACCTTTCTGCAGTGGACAGgttgattattctctatctctctactaagataaatacccgtgttttttgtatgttttcttttgttgctaagaa---aaaatatgaaaacca-agttggtctattt
upper sequence: GLYMA07G06950.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ34367 (Selaginella moellendorffii), 5'ss of exon 3
TGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTCAAATTCCTACAATTGGAATTGGGGCTGGACCCTTTTGCAGTGGACAAgttagttggcctaattaccattttggaaaatgttctgttcttgacatgtactttttgtaagagatgaatgcagcctacattagtgacagtaattttgttt
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TGTTCTAGAGTGTGTACCTTCGGCCGTTGGTGCTGCAATAACTTCATCATTGCAAATACCAACAATTGGAATTGGAGCCGGACCCTTTTGCAGTGGCCAGgtaaac------aatttccattt------atggtttatttacaagccgta-tattgaaaacatacaataccag---------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17023353|gb|BM094387.1|BM094387EST: CTTTTGCAGTGGACAA GTGCTAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCA
genomic: CTTTTGCAGTGGACAAgttagttggc ... gttcatgcagGTGCTAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTCAAATTCCTACAATTGGAATTGGGGCTGGACCCTTTTGCAGTGGACAAgttagttggcctaattaccattttggaaaatgttctgttcttgacatgtactttttgtaagagatgaatgcagcctacattagtgacagtaattttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA