Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcag

Basic information

species Glycine max
transcript GLYMA07G06580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06580.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G25520.2 (Arabidopsis thaliana), 5'ss of exon 3
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcag
                                         |   | ||||||||||| |||||||| ||||| |||||||||| || || | ||| | |  | ||  |     |   ||   | || || | |     |  | ||   | |    ||  |   |   ||||
-----------------------------------------ATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgat-----aataagaagcattgttattgtctctt--gttagaaactcaagtcacacaatgaatcag

upper sequence: GLYMA07G06580.1 (Glycine max), 5'ss of exon 5
lower sequence: AT3G25520.1 (Arabidopsis thaliana), 5'ss of exon 4
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtat-ttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcag
|||| || ||||| || || ||||| ||  | ||  | || |   | ||||||||||| |||||||| ||||| |||||||||| || || | ||| | |  | ||  |     |   ||   | || || | |     |  | ||   | |    ||  |   |   ||||
CTTACTGTACTGGCCTTCTTTTGGCTCGCCGTGTTTTAAAGATGTTGGAAATGGATGACGAGTATGAGGGAAACGTTGAGgtatgttgtgtgattggtttcatcttgat-----aataagaagcattgttattgtctctt--gttagaaactcaagtcacacaatgaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180774|gb|HO022213.1|HO022213
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAGTGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|7233784|gb|AW569127.1|AW569127
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCATGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|207824520|gb|GD794216.1|GD794216
EST:     CTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: CTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|193438676|gb|FK401001.1|FK401001
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCAT
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCAT
EST: gi|208094364|gb|GD897001.1|GD897001
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|9564071|gb|BE473580.1|BE473580
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|33387329|gb|CA850536.1|CA850536
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|7478382|gb|AW666243.1|AW666243
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|38192446|gb|CF921652.1|CF921652
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10231886|gb|BE800774.1|BE800774
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192328302|gb|FK020013.1|FK020013
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10232170|gb|BE801058.1|BE801058
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192333617|gb|FK025434.1|FK025434
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151409715|gb|EV279523.1|EV279523
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10846870|gb|BF069669.1|BF069669
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|192333816|gb|FK025077.1|FK025077
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|26058287|gb|CA801201.1|CA801201
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|18721850|gb|BM523372.1|BM523372
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|208295724|gb|GE091847.1|GE091847
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24205962|gb|BU965215.1|BU965215
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|17964387|gb|BM271123.1|BM271123
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|22523868|gb|BU082679.1|BU082679
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|10848276|gb|BF070811.1|BF070811
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24205862|gb|BU965115.1|BU965115
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|17153690|gb|BM143623.1|BM143623
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|15285156|gb|BI469047.1|BI469047
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24205298|gb|BU964551.1|BU964551
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGG
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGG
EST: gi|151397139|gb|EV267012.1|EV267012
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|33388021|gb|CA851228.1|CA851228
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|26045622|gb|CA783155.1|CA783155
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GTTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|16346338|gb|BI971933.1|BI971933
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6502218|gb|AW203591.1|AW203591
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|4396042|gb|AI495039.1|AI495039
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151411465|gb|EV281276.1|EV281276
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|208080424|gb|GD877186.1|GD877186
EST:     CTTGAAATGGATTGTAGGTAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: CTTGAAATGGA-TG-AGG-AGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|27426959|gb|CA938479.1|CA938479
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGATATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|24136031|gb|BU926541.1|BU926541
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|38193290|gb|CF922496.1|CF922496
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|38192834|gb|CF922040.1|CF922040
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6481795|gb|AW201066.1|AW201066
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6567363|gb|AW234974.1|AW234974
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|5753627|gb|AI960914.1|AI960914
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGCTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|9819571|gb|BE555084.1|BE555084
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|18692813|gb|BM521661.1|BM521661
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|213590604|gb|DB973335.1|DB973335
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|298199535|gb|HO042898.1|HO042898
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|6665970|gb|AW277429.1|AW277429
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|15662084|gb|BI699455.1|BI699455
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|14259966|gb|BG882874.1|BG882874
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGCGGAACCTGCTGAGAGCAAGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|23729388|gb|BU762778.1|BU762778
EST:     GAGTCCTCAAAACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|17998752|gb|BI119562.1|BI119562
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAAGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
EST: gi|151410521|gb|EV280336.1|EV280336
EST:     GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAG                         GCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC
genomic: GAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatga ... tttttttcagGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGgtatttatgagtttgctatgctgtttgtgccccagcgagtgcctttcttttggctgtgtaagctaatgagttgtatcttattttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA