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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCGGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtacgtatgtcttcttttttttccttttactttttttagtgtatggttgtatgtttcttgtttagaaaagatagaagtaccaaacttattttgttattattgtggcaaag

Basic information

species Glycine max
transcript GLYMA07G06240.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06240.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g43130.1 (Oryza sativa), 5'ss of exon 5
TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCGGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtacgtatgtcttcttttttttccttttactttttttagtgtatggttgtatgtttcttgtttagaaaagatagaagtaccaaacttattttgttattattgtggcaaag
  || | || ||||||||| | | |||||||||||| || ||||||    | |||||| ||||||| || ||| | |||||||| ||||||||||||||||||      ||| || ||| || || |  |   |||   |  || |   | || ||  | |||  ||    ||    ||                               
CCTATTGGATATGGGATTTAGAAGAGACATTGAGAAAATTATTGCTTTCATTCCTAAAGAACGACAGACACTTCTTTTTTCTGCTACTGTTCCAGAAGAGgta------tctcctatttgttactataccccgtttctata-atagcaatttgatttcttttttaaatgcttactgttag------------------------------

upper sequence: GLYMA07G06240.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G026371_T02 (Zea mays), 5'ss of exon 5
TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCGGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtacg----tatgtcttcttttttttccttttactttttttagtgta-tggttgtatgtttcttgtttagaaaagatagaagtaccaaacttattttgttattattgtggcaaag
  |  | || ||||||||| | | ||| |||||||| ||||||||| |  | |||| | |||| ||||| ||  | |||||||| ||||||||||||||||||      | | |||  || |    | |||||   |    | | || ||     | |||   |  ||||                                             
CCTGTTGGATATGGGATTTAGAAGAGATATTGAGAAAATAATTGCTTCAATTCCTAGAGAACGGCAAACACTGTTATTTTCTGCTACTGTTCCAGAAGAGgtatccctttttatctcattgtcccccattttatcctgaacaatctaatgaactgaagttctattgttag---------------------------------------------

upper sequence: GLYMA07G06240.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0046g01010.t01 (Vitis vinifera), 5'ss of exon 6
TTTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCGGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACTGTTCCAGAAGAGgtacgtatgtcttcttttttttccttttactttttttagtgtatggttgtatgtttcttgtttagaaaagatagaagtaccaaacttattttgttattattgtggcaaag
|||| |||||||||||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| ||  |||| |||||||| || |||||||||||         |||||| | |            ||||||||| ||    | ||| |||| ||  ||    || ||| | |  ||  |  ||| ||  ||||  |      
TTTATTAGACATGGGATTTCGTAAAGACATTGAGAAGATCATTGCTGCTGTTCCAAAACAGCGACAAACACTGCTGTTCTCTGCCACAGTCCCAGAAGAGgt---------ttctttctgt-----------attttagtgtgtgaa-atttgtctcttatt--gatttaattgaaattctgaagatccttt-ttggtatttag------