Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAGgtcaatgggtaccttctcaccttggtttatatgtttaaaattttgttccttttgttttaaacttatgctttaaaagacttgttgatttacttatgagttc...

Basic information

species Glycine max
transcript GLYMA07G05410.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05410.3 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G014902_T01 (Zea mays), 5'ss of exon 8
AGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAGgtcaatgggtaccttctcaccttggtttatatgtttaaa-attttgttccttttgttttaaacttatgctttaaaagacttgttgatttacttatgagttc----
||||| | || |||||||| |||||||| ||||| |||||||| ||||||||||| || |||||     | | |  | ||   |||| |  |    ||      ||     || ||    ||   || |  ||  |  | |||  | |||| || || |  |     
AGCATGTTGGGACAAAGACAGCCGTGCAGATCAGAAGTCACGCTCAAAAGTTCTTCACTAAGgtt----gtttctctatctgattggctagtgcccttgtttggttcagcgctgttaccctagcattctagttgcattgtcttcat-atttgctgataacgtgaatg

upper sequence: GLYMA07G05410.3 (Glycine max), 5'ss of exon 5
lower sequence: AT1G01060.2 (Arabidopsis thaliana), 5'ss of exon 4
AGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAGgtcaatgggt-accttctcaccttggtttatatgtttaaaattttgtt-ccttttgttttaaacttatgctttaaaa--gacttgttgatttacttatgagttc-
| ||||| || ||||||||||| || || ||||| ||||| |||||||||||||| |||||||| | | | | | | | |||  |   |||| |     | | ||| |||  ||| |||         ||  ||| | |  ||  | |   | |  |||  ||||  
AACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCACAAAAGTTCTTCACAAAGgtaagttgatgatcctttcagatctttttaaa-----acactttcgttatcttgtgtaaaggtaccattttttcatatcgatctatgactatgtttagaagttgc

upper sequence: GLYMA07G05410.3 (Glycine max), 5'ss of exon 5
lower sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 3
AGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGTCACGCACAAAAGTTCTTTACAAAGgtcaatgggtaccttctcaccttg-gtttat---atgtttaaaattttgttcctt-ttgttt--taa-acttatgctttaaaagacttgttgatttacttatgagttc
| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| ||||||||||| | |||||||| || ||  | ||||   ||   || |  |||||| ||| ||| ||  ||| | || |   | | || ||    |||| | | |        
AACATATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCATGCACAAAAATTCTTTTCAAAGgtcaatcgataccttctaactttatgcttattgtataaatatatctttgtttcttattgcttggtaatatttctatataataaaacaaactgatgttcat--------