Sequence
atgc intronic sequence ATGC exonic sequenceGGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa...
Basic information
species | Glycine max |
transcript | GLYMA07G05390.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 5
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa--
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TGTCCTATACTCATCAGTTGTGTATCCCCATAATTATGGTTTCATTCCAAGGACACTTTGTGAAGACAATGATCCAATGGATGTTCTGGTCCTGATGCAGgtaactccattgtgcttcttttcttttaaacatgcaaaacagtcctt--tgcattattaactgatagtgtctgagagcaggggatcagcctgcaagtccttt
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os01g64670.1 (Oryza sativa), 5'ss of exon 4
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa
||| |||||||| ||||| ||||| || || ||||| || |||||||| |||| || || |||||||| |||||||| ||||| | || ||||||||||| | | || | | || | || | | | | ||||| | ||| | || | | || |||
GGTCTTGTACTCGTCAGTGGTTTACCCCCACAACTACGGCTTCATCCCTCGAACGCTCTGCGAAGACAACGATCCAATGGATGTTCTAGTGCTCATGCAGgtgatcatccttcaactgta---tatgctgatgctgttataaattgtgcg--ataatcactgcaacacatgtccaaacgtttaattg--cag--------
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G104918_T03 (Zea mays), 5'ss of exon 5
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatt--tttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa-
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AGTCCTTTACTCATCAGTTGTATACCCTCACAATTATGGTTTCATTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTGGTCCTGATGCAGgttagtcagtcttccttttcccacttgtctgtgtcatgtggg-gacatttgtgaagaatgtag--agtattcactctttgtattacaaggcccttgtttctgt
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G061928_T02 (Zea mays), 5'ss of exon 5
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctc----tcttcatcagtagttaaa
|| |||||||||||||||| || ||||| || ||||||||| | ||||| ||||| |||||||||||||| ||||| ||||| || || || |||||||| | | || || |||| ||| || | || | ||| || || | ||| | | | ||| | | || | || | | |
AGTCCTGTACTCATCAGTTGTATACCCTCACAATTATGGTTTCGTTCCAAGGACTCTTTGTGAAGACAATGACCCAATGGATGTGTTAGTCCTGATGCAGgttagtctt--cctttttccacttgtctgtgtcatgt--ggggcatttgtgaagaatgtagagtattcactctttggattacaaggtccttatttctgttcagg
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 5'ss of exon 5
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaa-atttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa
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TATTCTCTACTCATCAGTTGTGTACCCTCACAACTATGGTTTTGTTCCTCGCACATTGTGTGAAGACAATGACCCCATTGATGTCTTAGTCATCATGCAGgtattactctttctttctttctcatattatccctatactatttgcaccaattttttgtatttcaaatatatattattatctttgtgtag------------
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G46860.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattat-acaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa
| | |||||||| || ||||||||||| || || || || ||||||||| | || ||||||||||||| ||||| |||||||| | || || |||||||||| | | | ||| | | |||| ||||||| | | | || | ||| | | |||| | || || | | | |
GATCTTGTACTCCTCCGTTGTTTATCCACACAATTACGGATTCATCCCACGGACATTGTGTGAAGACAACGATCCTCTTGATGTCCTTGTCCTTATGCAGgtaactgtgt----tttcacaaccatcaaaattatcatcaaataccacattgtgt--tgtaacctgagttagcttctgattcgtgtag-------------
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g02980.t01 (Vitis vinifera), 5'ss of exon 4
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaaga--ggccttaatgtataataaaaccaaaatttgcca------tggttctctcttcatcagtagttaaa-----------------
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TGTCTTATATTCATCTGTGGTGTATCCTCATAACTATGGATTCATTCCCCGTACCCTATGTGAAGACAATGATCCACTGGATGTTTTAATCCTCATGCAGgtag-ttcaaactagatagcatttaatcaa-taataagagctcgtctttgttttgcaactaaacagttgtgggcgagtagattggaagtgtttttacaagc--tcaaactgacatttttgaacag
upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 5
lower sequence: EFJ27219 (Selaginella moellendorffii), 5'ss of exon 4
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa
||| ||||||| || || || || || || |||||||||||||| || | |||||||| |||||||| |||||| | || |||||||| || ||||||||| | || | | | || | | || | || | |
GGTGCTGTACTCGTCGGTCGTGTACCCCCACAACTATGGTTTCATTCCTCGTACTCTGTGCGAAGACAACGATCCATTGGACGTCTTGGTCCTGATGCAGgtag-tgttctttttgtaagacgaagtta--ctacggtgggggtttcag---------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17400209|gb|BM176991.1|BM176991EST: GAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAG GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATG
genomic: GAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaattttt ... gacaatgtagGAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTTTGTACTCATCAGTTGTTTATCCTCATAACTATGGTTTCATCCCAAGAACTCTGTGTGAAGACAATGATCCAATTGATGTCTTGGTTCTCATGCAGgtaaatttttaccattttaaactcatccaaattatacaagaggccttaatgtataataaaaccaaaatttgccatggttctctcttcatcagtagttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc